Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetylornithine deacetylase | SAMN05421757_102347 | Not Available | Positive | 1265488 - 1266627 | 40151.8 |
| Trna-glu | Not Available | Not Available | Positive | 1266780 - 1266854 | Not Available |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN05421757_102349 | Not Available | Negative | 1267010 - 1268074 | 38382.5 |
| haem-no-binding | SAMN05421757_102350 | Not Available | Negative | 1268071 - 1268670 | 22068.5 |
| trimethylamine---corrinoid protein co-methyltransferase | SAMN05421757_102351 | Not Available | Negative | 1268747 - 1270330 | 57401.4 |
| phosphoglycolate phosphatase | SAMN05421757_102352 | Not Available | Negative | 1270425 - 1271120 | 23601.4 |
| protein of unknown function | SAMN05421757_102353 | Not Available | Negative | 1271152 - 1271430 | 9681.55 |
| response regulator receiver modulated diguanylate cyclase | SAMN05421757_102354 | Not Available | Positive | 1271533 - 1273029 | 53390.7 |
| uncharacterized membrane protein | SAMN05421757_102355 | Not Available | Negative | 1273121 - 1273684 | 21233.4 |
| hypothetical protein | SAMN05421757_102356 | Not Available | Negative | 1273704 - 1274129 | 14677.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
