Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4,5-dopa dioxygenase extradiol | SAMN05421757_102337 | Not Available | Positive | 1255673 - 1256494 | 30286.8 |
| hypothetical protein | SAMN05421757_102338 | Not Available | Negative | 1256680 - 1258140 | 51829.4 |
| hypothetical protein | SAMN05421757_102339 | Not Available | Negative | 1258140 - 1258481 | 12486.1 |
| predicted methyltransferase, contains tpr repeat | SAMN05421757_102340 | Not Available | Positive | 1259066 - 1260031 | 35180.8 |
| hypothetical protein | SAMN05421757_102341 | Not Available | Positive | 1260217 - 1260750 | 19786.3 |
| putative flavoprotein involved in k+ transport | SAMN05421757_102342 | Not Available | Positive | 1260963 - 1262222 | 45492.6 |
| phenylpropionate dioxygenase, large terminal subunit | SAMN05421757_102343 | Not Available | Positive | 1262248 - 1263390 | 42726.8 |
| enamine deaminase rida, house cleaning of reactive enamine intermediates, yjgf/yer057c/uk114 family | SAMN05421757_102344 | Not Available | Positive | 1263407 - 1263823 | 15575.5 |
| uncharacterized conserved protein, ntn-hydrolase superfamily | SAMN05421757_102345 | Not Available | Positive | 1263828 - 1264502 | 23211.6 |
| dna-binding transcriptional regulator, lysr family | SAMN05421757_102346 | Not Available | Positive | 1264480 - 1265484 | 36664.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
