Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ompa-ompf porin, oop family | SAMN05421757_10178 | Not Available | Negative | 85983 - 88028 | 72730.1 |
| 4-hydroxybenzoate polyprenyltransferase | SAMN05421757_10179 | Not Available | Negative | 88156 - 89148 | 35939.3 |
| 16s rrna (uracil1498-n3)-methyltransferase | SAMN05421757_10180 | Not Available | Positive | 89180 - 89893 | 25988.3 |
| hypothetical protein | SAMN05421757_10181 | Not Available | Positive | 89893 - 90756 | 30983.2 |
| hypothetical protein | SAMN05421757_10182 | Not Available | Positive | 90753 - 91280 | 18646.9 |
| glutamate--cysteine ligase | SAMN05421757_10183 | Not Available | Positive | 91424 - 92794 | 50858.5 |
| uncharacterized membrane protein yhah, duf805 family | SAMN05421757_10184 | Not Available | Negative | 92831 - 93196 | 13639.0 |
| acyl-phosphate glycerol-3-phosphate acyltransferase | SAMN05421757_10185 | Not Available | Negative | 93252 - 93854 | 20877.2 |
| dihydroorotase | SAMN05421757_10186 | Not Available | Negative | 94045 - 95322 | 45349.4 |
| hypothetical protein | SAMN05421757_10187 | Not Available | Negative | 95319 - 95873 | 19964.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
