Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3,4-dihydroxy 2-butanone 4-phosphate synthase / gtp cyclohydrolase ii | SAMN05421757_102276 | Not Available | Positive | 1199597 - 1200700 | 39812.5 |
| 6,7-dimethyl-8-ribityllumazine synthase | SAMN05421757_102277 | Not Available | Positive | 1200704 - 1201255 | 19416.3 |
| nusb antitermination factor | SAMN05421757_102278 | Not Available | Positive | 1201252 - 1201707 | 17021.2 |
| uncharacterized conserved protein ybaa, duf1428 family | SAMN05421757_102279 | Not Available | Negative | 1201791 - 1202153 | 13453.0 |
| glyoxalase superfamily enzyme, possibly 3-demethylubiquinone-9 3-methyltransferase | SAMN05421757_102280 | Not Available | Negative | 1202179 - 1202658 | 16877.2 |
| hypothetical protein | SAMN05421757_102281 | Not Available | Negative | 1202655 - 1203059 | 14139.8 |
| hypothetical protein | SAMN05421757_102282 | Not Available | Negative | 1203056 - 1203460 | 14641.4 |
| dna-binding transcriptional regulator, marr family | SAMN05421757_102283 | Not Available | Positive | 1203559 - 1204023 | 17239.9 |
| hypothetical protein | SAMN05421757_102284 | Not Available | Positive | 1204142 - 1204462 | 11508.3 |
| hypothetical protein | SAMN05421757_102286 | Not Available | Positive | 1204921 - 1205403 | 17805.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
