Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or ed | SAMN05421757_102226 | Not Available | Positive | 1147683 - 1148342 | 23185.4 |
| 5-methyltetrahydrofolate--homocysteine methyltransferase | SAMN05421757_102227 | Not Available | Positive | 1148339 - 1149319 | 34792.0 |
| hypothetical protein | SAMN05421757_102228 | Not Available | Positive | 1149355 - 1149588 | 8565.43 |
| uncharacterized 2fe-2 and 4fe-4s clusters-containing protein, contains duf4445 domain | SAMN05421757_102229 | Not Available | Positive | 1149656 - 1151689 | 71001.1 |
| Trna-gly | Not Available | Not Available | Positive | 1151748 - 1151821 | Not Available |
| acyl-coa thioester hydrolase | SAMN05421757_102231 | Not Available | Positive | 1151903 - 1152376 | 17954.3 |
| glucose-6-phosphate isomerase | SAMN05421757_102232 | Not Available | Negative | 1152470 - 1154071 | 57536.0 |
| 6-phosphogluconolactonase | SAMN05421757_102233 | Not Available | Negative | 1154081 - 1154770 | 24796.8 |
| glucose-6-phosphate 1-dehydrogenase | SAMN05421757_102234 | Not Available | Negative | 1154749 - 1156203 | 54585.3 |
| transglycosylase slt domain-containing protein | SAMN05421757_102235 | Not Available | Positive | 1156568 - 1157053 | 17849.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
