Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative metalloprotease | SAMN05421757_102216 | Not Available | Positive | 1137069 - 1137767 | 25672.3 |
| protein of unknown function | SAMN05421757_102217 | Not Available | Positive | 1137882 - 1138562 | 23374.5 |
| hydrophobic/amphiphilic exporter-1, hae1 family | SAMN05421757_102218 | Not Available | Negative | 1138566 - 1141718 | 111337.0 |
| membrane fusion protein, multidrug efflux system | SAMN05421757_102219 | Not Available | Negative | 1141723 - 1142880 | 41299.9 |
| hint domain-containing protein | SAMN05421757_102220 | Not Available | Negative | 1143051 - 1143704 | 22580.4 |
| hypothetical protein | SAMN05421757_102221 | Not Available | Positive | 1143960 - 1144211 | 9054.58 |
| 23s rrna um-2552 2'-o-methyltransferase | SAMN05421757_102222 | Not Available | Negative | 1144212 - 1144946 | 26203.4 |
| ppx/gppa phosphatase | SAMN05421757_102223 | Not Available | Negative | 1145065 - 1146177 | 40600.0 |
| virulence factor | SAMN05421757_102224 | Not Available | Positive | 1146425 - 1146721 | 10811.8 |
| methylenetetrahydrofolate reductase (nadph) | SAMN05421757_102225 | Not Available | Positive | 1146748 - 1147674 | 33330.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
