Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized membrane protein | SAMN05421757_102166 | Not Available | Positive | 1089014 - 1089688 | 25556.0 |
| lipopolysaccharide export system permease protein | SAMN05421757_102167 | Not Available | Positive | 1090001 - 1091131 | 42075.5 |
| lipopolysaccharide export system permease protein | SAMN05421757_102168 | Not Available | Positive | 1091128 - 1092234 | 39796.1 |
| lps-assembly protein | SAMN05421757_102169 | Not Available | Positive | 1092231 - 1094357 | 79536.2 |
| periplasmic chaperone for outer membrane proteins sura | SAMN05421757_102170 | Not Available | Positive | 1094453 - 1095673 | 44233.7 |
| 4-hydroxythreonine-4-phosphate dehydrogenase | SAMN05421757_102171 | Not Available | Positive | 1095673 - 1096668 | 34331.6 |
| dimethyladenosine transferase | SAMN05421757_102172 | Not Available | Positive | 1096757 - 1097608 | 30251.9 |
| protein of unknown function | SAMN05421757_102173 | Not Available | Negative | 1097668 - 1098327 | 23632.7 |
| [protein release factor]-glutamine n5-methyltransferase | SAMN05421757_102174 | Not Available | Negative | 1098606 - 1099436 | 28964.4 |
| peptide chain release factor 1 | SAMN05421757_102175 | Not Available | Negative | 1099433 - 1100428 | 36319.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
