Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydroxyacetone kinase dhak subunit | SAMN05421757_102146 | Not Available | Negative | 1066680 - 1067675 | 34967.3 |
| 4-hydroxy-2-oxoheptanedioate aldolase | SAMN05421757_102147 | Not Available | Negative | 1067703 - 1068494 | 28427.9 |
| tcta family transporter | SAMN05421757_102148 | Not Available | Negative | 1068491 - 1070005 | 52596.7 |
| putative tricarboxylic transport membrane protein | SAMN05421757_102149 | Not Available | Negative | 1070013 - 1070486 | 16713.3 |
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05421757_102150 | Not Available | Negative | 1070593 - 1071579 | 34112.6 |
| transcriptional regulator, laci family | SAMN05421757_102151 | Not Available | Positive | 1071782 - 1072798 | 36499.9 |
| ca2+-binding protein, rtx toxin-related | SAMN05421757_102152 | Not Available | Negative | 1072809 - 1075508 | 93190.9 |
| hypothetical protein | SAMN05421757_102153 | Not Available | Positive | 1075916 - 1076266 | 12604.3 |
| transcriptional regulator, asnc family | SAMN05421757_102154 | Not Available | Negative | 1076283 - 1076747 | 17177.8 |
| l-proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase | SAMN05421757_102155 | Not Available | Positive | 1076872 - 1080327 | 121873.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
