Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| invasion protein ialb, involved in pathogenesis | SAMN05421757_102136 | Not Available | Positive | 1054440 - 1055144 | 24221.3 |
| nodulation protein e | SAMN05421757_102137 | Not Available | Negative | 1055243 - 1056451 | 42549.0 |
| acyl carrier protein | SAMN05421757_102138 | Not Available | Negative | 1056448 - 1056717 | 9382.01 |
| udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase | SAMN05421757_102139 | Not Available | Negative | 1056752 - 1057843 | 37400.0 |
| murein l,d-transpeptidase ycbb/ykud | SAMN05421757_102140 | Not Available | Negative | 1057963 - 1059567 | 58610.0 |
| uncharacterized conserved protein ycbk, duf882 family | SAMN05421757_102141 | Not Available | Positive | 1060056 - 1060502 | 16763.2 |
| hypothetical protein | SAMN05421757_102142 | Not Available | Positive | 1060878 - 1062305 | 50361.8 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN05421757_102143 | Not Available | Positive | 1062322 - 1065015 | 98537.7 |
| sulfotransferase family protein | SAMN05421757_102144 | Not Available | Positive | 1065093 - 1065914 | 31081.3 |
| dihydroxyacetone kinase, c-terminal domain | SAMN05421757_102145 | Not Available | Negative | 1066075 - 1066680 | 20544.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
