Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dipeptide transport system permease protein | SAMN05421757_10158 | Not Available | Positive | 67311 - 68201 | 32367.3 |
| dipeptide transport system atp-binding protein | SAMN05421757_10159 | Not Available | Positive | 68206 - 69183 | 35355.0 |
| dipeptide transport system atp-binding protein | SAMN05421757_10160 | Not Available | Positive | 69180 - 70133 | 35117.7 |
| tryptophan 2,3-dioxygenase (vermilion) | SAMN05421757_10161 | Not Available | Positive | 70320 - 71531 | 44566.3 |
| phosphoribulokinase / uridine kinase family protein | SAMN05421757_10162 | Not Available | Negative | 71545 - 72162 | 22395.8 |
| sugar kinase of the nbd/hsp70 family, may contain an n-terminal hth domain | SAMN05421757_10163 | Not Available | Positive | 72312 - 73532 | 43898.0 |
| tryptophan 2,3-dioxygenase | SAMN05421757_10164 | Not Available | Positive | 73616 - 74410 | 29449.2 |
| hypothetical protein | SAMN05421757_10165 | Not Available | Positive | 74510 - 75070 | 19532.4 |
| 4 tms phage holin, superfamily iv | SAMN05421757_10166 | Not Available | Negative | 75254 - 75649 | 13835.7 |
| ion channel | SAMN05421757_10167 | Not Available | Positive | 75849 - 76232 | 13421.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
