Dokdonia pacifica strain DSM 25597

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Dokdonia

Description

Dokdonia pacifica strain DSM 25597 is a Gram-negative, rod-shaped bacterium. It is characterized by possessing a single replicon, which is indicative of its genomic organization. The strain is cataloged under the accession number FZNY00000000.1, reflecting its unique genetic sequence in microbial databases. As a member of the Dokdonia genus, this strain is likely to play a role in marine ecosystems, particularly in nutrient cycling and organic matter degradation. Gram-negative bacteria, including those in the Dokdonia genus, are known for their diverse metabolic capabilities, which can contribute to the health of marine environments by participating in the breakdown of complex organic compounds. Understanding the traits of Dokdonia pacifica DSM 25597 not only enriches our knowledge of marine microbial diversity but also highlights the ecological significance of such organisms in ocean biogeochemistry. The presence of this strain in marine environments could indicate its potential involvement in processes such as primary production or nutrient recycling, essential for sustaining marine food webs.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusDokdonia
SpeciesDokdonia pacifica
Strainstrain DSM 25597

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Leptonotus elevatus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dokdonia pacifica strain DSM 25597


Gene Summary

Adenine Count

1822749 bp

Thymine Count

1814606 bp

Guanine Count

931531 bp

Cytosine Count

951057 bp

Genome Length

5520745 bp

Protein-coding Genes

4863 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Hypothetical proteinSAMN06265376_106256Not AvailablePositive4016040 - 401645315520.1
Putative peptide formylmethionine deformylaseSAMN06265376_106258Not AvailableNegative4016818 - 401734220186.4
Baseplate puncturing deviceSAMN06265376_107154Not AvailableNegative4344145 - 43444359362.61
rhs element vgr proteinSAMN06265376_107155Not AvailableNegative4344447 - 434619263769.6
hypothetical proteinSAMN06265376_107156Not AvailableNegative4346195 - 434691727094.9
hypothetical proteinSAMN06265376_107157Not AvailableNegative4346917 - 43470786150.51
Putative tail tube protein 2SAMN06265376_107158Not AvailableNegative4347256 - 434771717071.3
Putative tail tube protein 2SAMN06265376_107159Not AvailableNegative4347722 - 434815316060.1
Putative tail sheath proteinSAMN06265376_107160Not AvailableNegative4348292 - 434963848251.7
Putative tail tube protein 2SAMN06265376_107161Not AvailableNegative4349675 - 435010616067.0

Displaying genes 21 – 30 of 410 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.