Dokdonia pacifica strain DSM 25597

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Dokdonia

Description

Dokdonia pacifica strain DSM 25597 is a Gram-negative, rod-shaped bacterium. It is characterized by possessing a single replicon, which is indicative of its genomic organization. The strain is cataloged under the accession number FZNY00000000.1, reflecting its unique genetic sequence in microbial databases. As a member of the Dokdonia genus, this strain is likely to play a role in marine ecosystems, particularly in nutrient cycling and organic matter degradation. Gram-negative bacteria, including those in the Dokdonia genus, are known for their diverse metabolic capabilities, which can contribute to the health of marine environments by participating in the breakdown of complex organic compounds. Understanding the traits of Dokdonia pacifica DSM 25597 not only enriches our knowledge of marine microbial diversity but also highlights the ecological significance of such organisms in ocean biogeochemistry. The presence of this strain in marine environments could indicate its potential involvement in processes such as primary production or nutrient recycling, essential for sustaining marine food webs.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusDokdonia
SpeciesDokdonia pacifica
Strainstrain DSM 25597

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Leptonotus elevatus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dokdonia pacifica strain DSM 25597 genome assembly, contig:

Gene Summary

Adenine Count

1822749 bp

Thymine Count

1814606 bp

Guanine Count

931531 bp

Cytosine Count

951057 bp

Genome Length

5520745 bp

Protein-coding Genes

4863 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxine 5'-phosphate synthaseSAMN06265376_101196Not AvailableNegative201303 - 20201626451.5
hypothetical proteinSAMN06265376_101197Not AvailablePositive202096 - 20275225176.4
nad+ kinaseSAMN06265376_101198Not AvailablePositive202756 - 20364032719.4
hypothetical proteinSAMN06265376_101199Not AvailablePositive203827 - 20448024454.5
undecaprenyl diphosphate synthaseSAMN06265376_101200Not AvailablePositive204470 - 20522829285.2
beta-barrel assembly machine subunit bamaSAMN06265376_101201Not AvailablePositive205245 - 20782496762.8
periplasmic chaperone for outer membrane proteins skpSAMN06265376_101202Not AvailablePositive207788 - 20889442661.9
periplasmic chaperone for outer membrane proteins skpSAMN06265376_101203Not AvailablePositive208933 - 20944819209.2
glutamate racemaseSAMN06265376_101204Not AvailablePositive209531 - 21034930151.8
two component transcriptional regulator, lyttr familySAMN06265376_101205Not AvailableNegative210353 - 21109027645.3

Displaying genes 231 – 240 of 410 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.