Paracoccus sediminis strain DSM 26170

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Paracoccus

Description

Paracoccus sediminis strain DSM 26170 is a notable species within the Paracoccus genus, characterized by the presence of flagella, which suggests a degree of motility that may facilitate its adaptation to various environments. This strain has been cataloged with a single replicon, indicating a relatively straightforward genomic structure that could have implications for its genetic stability and inheritance. The genomic information of Paracoccus sediminis is accessible under the accession number FZNM00000000.1, which provides a foundation for further research and understanding of its genetic makeup. The single replicon feature may also suggest a streamlined genome that could be advantageous for survival in specific ecological niches. The presence of flagella in this strain could play a crucial role in its ecological interactions, potentially aiding in nutrient acquisition or colonization of substrates in its environment. As a member of the Paracoccus genus, which is known for its versatility in various habitats, Paracoccus sediminis may contribute to biogeochemical cycles, particularly in sedimentary environments where it can participate in organic matter decomposition and nutrient recycling. This ecological role highlights the importance of studying such microorganisms, as they can have significant impacts on ecosystem functioning and health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusParacoccus
SpeciesParacoccus sediminis
Strainstrain DSM 26170

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paracoccus sediminis strain DSM 26170 genome assembly, contig:

Gene Summary

Adenine Count

620898 bp

Thymine Count

616861 bp

Guanine Count

1205227 bp

Cytosine Count

1202765 bp

Genome Length

3645751 bp

Protein-coding Genes

3466 genes

Non-Coding Genes

139 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iv secretory pathway, vird2 components (relaxase)SAMN06265378_11394Not AvailablePositive3040014 - 304175363896.7
type iv secretion system protein vird4SAMN06265378_11395Not AvailablePositive3041779 - 304376473915.4
ribbon-helix-helix protein, copg familySAMN06265378_11396Not AvailablePositive3043772 - 304419715704.9
pyridoxamine 5'-phosphate oxidaseSAMN06265378_11397Not AvailableNegative3044299 - 304485921100.2
permease of the drug/metabolite transporter (dmt) superfamilySAMN06265378_11398Not AvailableNegative3044856 - 304579433177.6
nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase familySAMN06265378_11399Not AvailableNegative3045799 - 304650324739.4
transcriptional regulator, lysr familySAMN06265378_113100Not AvailablePositive3046631 - 304751832701.2
hypothetical proteinSAMN06265378_1141Not AvailablePositive3047786 - 30478833367.99
hypothetical proteinSAMN06265378_1142Not AvailableNegative3047902 - 304929948271.1
magnesium chelatase family proteinSAMN06265378_1143Not AvailableNegative3049361 - 305087552818.2

Displaying genes 3061 – 3070 of 3605 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.