Paracoccus sediminis strain DSM 26170

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Paracoccus

Description

Paracoccus sediminis strain DSM 26170 is a notable species within the Paracoccus genus, characterized by the presence of flagella, which suggests a degree of motility that may facilitate its adaptation to various environments. This strain has been cataloged with a single replicon, indicating a relatively straightforward genomic structure that could have implications for its genetic stability and inheritance. The genomic information of Paracoccus sediminis is accessible under the accession number FZNM00000000.1, which provides a foundation for further research and understanding of its genetic makeup. The single replicon feature may also suggest a streamlined genome that could be advantageous for survival in specific ecological niches. The presence of flagella in this strain could play a crucial role in its ecological interactions, potentially aiding in nutrient acquisition or colonization of substrates in its environment. As a member of the Paracoccus genus, which is known for its versatility in various habitats, Paracoccus sediminis may contribute to biogeochemical cycles, particularly in sedimentary environments where it can participate in organic matter decomposition and nutrient recycling. This ecological role highlights the importance of studying such microorganisms, as they can have significant impacts on ecosystem functioning and health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusParacoccus
SpeciesParacoccus sediminis
Strainstrain DSM 26170

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paracoccus sediminis strain DSM 26170 genome assembly, contig:

Gene Summary

Adenine Count

620898 bp

Thymine Count

616861 bp

Guanine Count

1205227 bp

Cytosine Count

1202765 bp

Genome Length

3645751 bp

Protein-coding Genes

3466 genes

Non-Coding Genes

139 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-hydroxy-tetrahydrodipicolinate synthaseSAMN06265378_105123Not AvailableNegative1911995 - 191291833443.5
short-chain dehydrogenaseSAMN06265378_105124Not AvailablePositive1912969 - 191371825785.2
site-specific recombinase xerdSAMN06265378_105125Not AvailablePositive1913758 - 191479237558.4
hypothetical proteinSAMN06265378_105126Not AvailablePositive1914861 - 19151279482.07
cell wall hydrolaseSAMN06265378_105127Not AvailableNegative1915153 - 191565318376.5
5-deoxyglucuronate isomeraseSAMN06265378_105128Not AvailableNegative1915729 - 191653829710.9
2-keto-myo-inositol dehydrataseSAMN06265378_105129Not AvailableNegative1916619 - 191753032440.3
3d-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolaseSAMN06265378_105130Not AvailableNegative1917543 - 191939365004.5
5-dehydro-2-deoxygluconokinaseSAMN06265378_105131Not AvailableNegative1919452 - 192137469515.8
2-keto-myo-inositol isomeraseSAMN06265378_105132Not AvailableNegative1921398 - 192218327791.1

Displaying genes 1961 – 1970 of 3605 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.