Pelagimonas varians strain CECT 8663

rodMotileaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Pelagimonas

Description

Pelagimonas varians strain CECT 8663 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain exhibits mesophilic growth, with an optimal temperature for proliferation identified at 29°C. The genomic structure of Pelagimonas varians strain CECT 8663 is notable for having a single replicon, indicating a streamlined genetic organization that may contribute to its adaptability and survival in specific ecological niches. The strain is cataloged under the accession number FXYH00000000.1, which serves as a reference for its genomic data. Understanding the traits of Pelagimonas varians strain CECT 8663 can offer insights into its ecological role, particularly in marine environments where similar aerobic, mesophilic bacteria are often integral to nutrient cycling and organic matter degradation. The reliance on aerobic conditions suggests that this strain may play a significant role in the decomposition of organic materials in oxygen-rich aquatic ecosystems, contributing to the overall health and function of these environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPelagimonas
SpeciesPelagimonas varians
Strainstrain CECT 8663

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
Habitatgut
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pelagimonas varians strain CECT 8663 genome assembly, contig:

Gene Summary

Adenine Count

1099218 bp

Thymine Count

1095060 bp

Guanine Count

1341998 bp

Cytosine Count

1360831 bp

Genome Length

4897107 bp

Protein-coding Genes

4651 genes

Non-Coding Genes

142 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thymidylate synthase thyxPEV8663_00529Not AvailablePositive537921 - 53882634674.2
putative nucleotide-binding protein containing tir-like domain proteinPEV8663_00530Not AvailablePositive538833 - 53972633187.0
hypothetical proteinPEV8663_00531Not AvailablePositive539883 - 54022112069.4
dna topoisomerase 4 subunit bPEV8663_00532Not AvailablePositive540325 - 54228371747.5
hypothetical proteinPEV8663_00533Not AvailablePositive542324 - 54303426593.9
cytochrome cPEV8663_00534Not AvailableNegative543047 - 54345414551.7
poly(beta-d-mannuronate) c5 epimerase 2PEV8663_00535Not AvailablePositive544067 - 549643184837.0
hypothetical proteinPEV8663_00536Not AvailablePositive549804 - 55012711682.1
membrane-bound lytic murein transglycosylase b precursorPEV8663_00537Not AvailableNegative550124 - 55136543910.2
hypothetical proteinPEV8663_00538Not AvailableNegative551476 - 55173610130.1

Displaying genes 651 – 660 of 4793 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.