Pelagimonas varians strain CECT 8663

rodMotileaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Pelagimonas

Description

Pelagimonas varians strain CECT 8663 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain exhibits mesophilic growth, with an optimal temperature for proliferation identified at 29°C. The genomic structure of Pelagimonas varians strain CECT 8663 is notable for having a single replicon, indicating a streamlined genetic organization that may contribute to its adaptability and survival in specific ecological niches. The strain is cataloged under the accession number FXYH00000000.1, which serves as a reference for its genomic data. Understanding the traits of Pelagimonas varians strain CECT 8663 can offer insights into its ecological role, particularly in marine environments where similar aerobic, mesophilic bacteria are often integral to nutrient cycling and organic matter degradation. The reliance on aerobic conditions suggests that this strain may play a significant role in the decomposition of organic materials in oxygen-rich aquatic ecosystems, contributing to the overall health and function of these environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPelagimonas
SpeciesPelagimonas varians
Strainstrain CECT 8663

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
Habitatgut
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pelagimonas varians strain CECT 8663 genome assembly, contig:

Gene Summary

Adenine Count

1099218 bp

Thymine Count

1095060 bp

Guanine Count

1341998 bp

Cytosine Count

1360831 bp

Genome Length

4897107 bp

Protein-coding Genes

4651 genes

Non-Coding Genes

142 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
toluene efflux pump membrane transporter ttgePEV8663_02103Not AvailableNegative2079577 - 2083275134064.0
solvent efflux pump periplasmic linker srpa precursorPEV8663_02104Not AvailableNegative2083272 - 208523367683.3
hypothetical proteinPEV8663_02105Not AvailablePositive2085499 - 208615523384.6
outer membrane protein assembly factor bamb precursorPEV8663_02106Not AvailablePositive2086203 - 208752546142.5
gtpase derPEV8663_02107Not AvailablePositive2087676 - 208913653741.1
serine--trna ligasePEV8663_02108Not AvailableNegative2089233 - 209052546924.4
secreted effector protein pipb2PEV8663_02109Not AvailableNegative2090601 - 209192349063.1
flagellinPEV8663_02110Not AvailablePositive2092269 - 209351642588.6
preprotein translocase subunit yajcPEV8663_02111Not AvailablePositive2093742 - 209402910536.1
preprotein translocase subunit secdPEV8663_02112Not AvailablePositive2094036 - 209570359184.8

Displaying genes 2141 – 2150 of 4793 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.