Idiomarina planktonica strain CGMCC 1.12458

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Idiomarinaceae

Genus

Pseudidiomarina

Description

Idiomarina planktonica strain CGMCC 1.12458 is characterized by its possession of a single replicon, which indicates a streamlined genetic architecture. This trait may confer certain advantages in terms of genetic stability and replication efficiency, potentially allowing the strain to thrive in its ecological niche. The strain is documented under the accession number FXWH00000000.1, which serves as a reference for genomic information and allows for further exploration of its genetic and functional attributes. Accessions are crucial in microbiology as they facilitate the retrieval and comparison of genomic data across different databases and studies. As an aquatic microorganism, Idiomarina planktonica is likely to play a significant role in its ecosystem, contributing to nutrient cycling and influencing the dynamics of microbial communities in marine environments. Its capacity to adapt to specific environmental conditions may enhance its ecological relevance, particularly in the context of planktonic populations. Understanding the genetic composition and ecological roles of strains like Idiomarina planktonica CGMCC 1.12458 can provide valuable insights into marine microbiology and the functioning of aquatic ecosystems. The single replicon feature may allow for a focused study on its metabolic pathways and ecological interactions, shedding light on its contribution to marine biodiversity and ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyIdiomarinaceae
GenusPseudidiomarina
SpeciesPseudidiomarina planktonica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Idiomarina planktonica strain CGMCC 1.12458 genome assembly,

Gene Summary

Adenine Count

654366 bp

Thymine Count

659272 bp

Guanine Count

644957 bp

Cytosine Count

616317 bp

Genome Length

2574939 bp

Protein-coding Genes

2386 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
msha pilin protein mshcSAMN06297229_0401Not AvailablePositive429097 - 42958216977.2
msha pilin protein mshdSAMN06297229_0402Not AvailablePositive429579 - 43011518821.0
msha biogenesis protein mshoSAMN06297229_0403Not AvailablePositive430115 - 43092429300.8
msha biogenesis protein mshpSAMN06297229_0404Not AvailablePositive430914 - 43139916804.9
protein ccma, bactofilin familySAMN06297229_0405Not AvailablePositive431386 - 43418796586.8
formylglycine-generating enzyme, required for sulfatase activity, contains sumf1/fge domainSAMN06297229_0406Not AvailablePositive434441 - 43631569746.5
rod shape-determining protein mrebSAMN06297229_0407Not AvailablePositive436446 - 43748937098.9
rod shape-determining protein mrecSAMN06297229_0408Not AvailablePositive437498 - 43841834205.9
rod shape-determining protein mredSAMN06297229_0409Not AvailablePositive438405 - 43889018278.5
septum formation proteinSAMN06297229_0410Not AvailablePositive438887 - 43947420923.1

Displaying genes 401 – 410 of 2439 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.