Idiomarina planktonica strain CGMCC 1.12458

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Idiomarinaceae

Genus

Pseudidiomarina

Description

Idiomarina planktonica strain CGMCC 1.12458 is characterized by its possession of a single replicon, which indicates a streamlined genetic architecture. This trait may confer certain advantages in terms of genetic stability and replication efficiency, potentially allowing the strain to thrive in its ecological niche. The strain is documented under the accession number FXWH00000000.1, which serves as a reference for genomic information and allows for further exploration of its genetic and functional attributes. Accessions are crucial in microbiology as they facilitate the retrieval and comparison of genomic data across different databases and studies. As an aquatic microorganism, Idiomarina planktonica is likely to play a significant role in its ecosystem, contributing to nutrient cycling and influencing the dynamics of microbial communities in marine environments. Its capacity to adapt to specific environmental conditions may enhance its ecological relevance, particularly in the context of planktonic populations. Understanding the genetic composition and ecological roles of strains like Idiomarina planktonica CGMCC 1.12458 can provide valuable insights into marine microbiology and the functioning of aquatic ecosystems. The single replicon feature may allow for a focused study on its metabolic pathways and ecological interactions, shedding light on its contribution to marine biodiversity and ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyIdiomarinaceae
GenusPseudidiomarina
SpeciesPseudidiomarina planktonica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Idiomarina planktonica strain CGMCC 1.12458 genome assembly,

Gene Summary

Adenine Count

654366 bp

Thymine Count

659272 bp

Guanine Count

644957 bp

Cytosine Count

616317 bp

Genome Length

2574939 bp

Protein-coding Genes

2386 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
flagellum-specific atp synthaseSAMN06297229_2312Not AvailablePositive2436011 - 243737548680.1
flagellar flij proteinSAMN06297229_2313Not AvailablePositive2437362 - 243780817537.9
hook-length control protein flikSAMN06297229_2314Not AvailablePositive2437871 - 243968264729.9
flagellar flil proteinSAMN06297229_2315Not AvailablePositive2439760 - 244029919315.2
flagellar motor switch protein flimSAMN06297229_2316Not AvailablePositive2440310 - 244138040265.3
flagellar motor switch protein flin/fliySAMN06297229_2317Not AvailablePositive2441410 - 244182615084.7
flagellar protein flio/flizSAMN06297229_2318Not AvailablePositive2441826 - 244223314485.9
flagellar biosynthetic protein flipSAMN06297229_2319Not AvailablePositive2442226 - 244297227243.4
flagellar biosynthetic protein fliqSAMN06297229_2320Not AvailablePositive2443000 - 24432699619.17
flagellar biosynthetic protein flirSAMN06297229_2321Not AvailablePositive2443269 - 244405128136.6

Displaying genes 2301 – 2310 of 2439 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.