Idiomarina planktonica strain CGMCC 1.12458

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Idiomarinaceae

Genus

Pseudidiomarina

Description

Idiomarina planktonica strain CGMCC 1.12458 is characterized by its possession of a single replicon, which indicates a streamlined genetic architecture. This trait may confer certain advantages in terms of genetic stability and replication efficiency, potentially allowing the strain to thrive in its ecological niche. The strain is documented under the accession number FXWH00000000.1, which serves as a reference for genomic information and allows for further exploration of its genetic and functional attributes. Accessions are crucial in microbiology as they facilitate the retrieval and comparison of genomic data across different databases and studies. As an aquatic microorganism, Idiomarina planktonica is likely to play a significant role in its ecosystem, contributing to nutrient cycling and influencing the dynamics of microbial communities in marine environments. Its capacity to adapt to specific environmental conditions may enhance its ecological relevance, particularly in the context of planktonic populations. Understanding the genetic composition and ecological roles of strains like Idiomarina planktonica CGMCC 1.12458 can provide valuable insights into marine microbiology and the functioning of aquatic ecosystems. The single replicon feature may allow for a focused study on its metabolic pathways and ecological interactions, shedding light on its contribution to marine biodiversity and ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyIdiomarinaceae
GenusPseudidiomarina
SpeciesPseudidiomarina planktonica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Idiomarina planktonica strain CGMCC 1.12458 genome assembly,

Gene Summary

Adenine Count

654366 bp

Thymine Count

659272 bp

Guanine Count

644957 bp

Cytosine Count

616317 bp

Genome Length

2574939 bp

Protein-coding Genes

2386 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative thiamine transport system substrate-binding proteinSAMN06297229_2252Not AvailablePositive2374317 - 237545342010.6
putative thiamine transport system permease proteinSAMN06297229_2253Not AvailablePositive2375429 - 237711462879.0
putative thiamine transport system atp-binding proteinSAMN06297229_2254Not AvailablePositive2377101 - 237773623416.3
phosphatidylglycerophosphate synthaseSAMN06297229_2255Not AvailablePositive2377729 - 237834322277.5
sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamilySAMN06297229_2256Not AvailableNegative2378340 - 237915230745.9
carboxypeptidase c (cathepsin a)SAMN06297229_2257Not AvailablePositive2379308 - 238083757734.9
uncharacterized membrane protein yqae, homolog of blt101, upf0057 familySAMN06297229_2258Not AvailablePositive2380962 - 23811205822.57
azurinSAMN06297229_2259Not AvailablePositive2381214 - 238166615782.6
membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, elab/yqjd/duf883 familySAMN06297229_2260Not AvailablePositive2381826 - 23820839112.56
putative holin-x, holin superfamily iiiSAMN06297229_2261Not AvailablePositive2382088 - 238244112584.7

Displaying genes 2241 – 2250 of 2439 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.