Idiomarina planktonica strain CGMCC 1.12458

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Idiomarinaceae

Genus

Pseudidiomarina

Description

Idiomarina planktonica strain CGMCC 1.12458 is characterized by its possession of a single replicon, which indicates a streamlined genetic architecture. This trait may confer certain advantages in terms of genetic stability and replication efficiency, potentially allowing the strain to thrive in its ecological niche. The strain is documented under the accession number FXWH00000000.1, which serves as a reference for genomic information and allows for further exploration of its genetic and functional attributes. Accessions are crucial in microbiology as they facilitate the retrieval and comparison of genomic data across different databases and studies. As an aquatic microorganism, Idiomarina planktonica is likely to play a significant role in its ecosystem, contributing to nutrient cycling and influencing the dynamics of microbial communities in marine environments. Its capacity to adapt to specific environmental conditions may enhance its ecological relevance, particularly in the context of planktonic populations. Understanding the genetic composition and ecological roles of strains like Idiomarina planktonica CGMCC 1.12458 can provide valuable insights into marine microbiology and the functioning of aquatic ecosystems. The single replicon feature may allow for a focused study on its metabolic pathways and ecological interactions, shedding light on its contribution to marine biodiversity and ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyIdiomarinaceae
GenusPseudidiomarina
SpeciesPseudidiomarina planktonica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Idiomarina planktonica strain CGMCC 1.12458 genome assembly,

Gene Summary

Adenine Count

654366 bp

Thymine Count

659272 bp

Guanine Count

644957 bp

Cytosine Count

616317 bp

Genome Length

2574939 bp

Protein-coding Genes

2386 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna helicase/exodeoxyribonuclease v, alpha subunitSAMN06297229_1968Not AvailablePositive2057948 - 205996373593.7
threonine/homoserine efflux transporter rhtaSAMN06297229_1969Not AvailableNegative2060081 - 206094730191.8
maoc like domain-containing proteinSAMN06297229_1970Not AvailableNegative2060991 - 206187232968.6
acyl-homoserine-lactone acylaseSAMN06297229_1971Not AvailablePositive2062042 - 206460691936.1
methyl-accepting chemotaxis proteinSAMN06297229_1972Not AvailablePositive2064868 - 206636153716.2
hypothetical proteinSAMN06297229_1973Not AvailablePositive2066362 - 206689218866.3
hypothetical proteinSAMN06297229_1974Not AvailablePositive2066995 - 206743816491.9
amino acid abc transporter substrate-binding protein, paat familySAMN06297229_1975Not AvailablePositive2067562 - 206845833077.4
predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domainsSAMN06297229_1978Not AvailablePositive2069097 - 207008637234.0
uncharacterized membrane protein yfcaSAMN06297229_1979Not AvailablePositive2070165 - 207090526333.6

Displaying genes 1961 – 1970 of 2439 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.