Idiomarina planktonica strain CGMCC 1.12458

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Idiomarinaceae

Genus

Pseudidiomarina

Description

Idiomarina planktonica strain CGMCC 1.12458 is characterized by its possession of a single replicon, which indicates a streamlined genetic architecture. This trait may confer certain advantages in terms of genetic stability and replication efficiency, potentially allowing the strain to thrive in its ecological niche. The strain is documented under the accession number FXWH00000000.1, which serves as a reference for genomic information and allows for further exploration of its genetic and functional attributes. Accessions are crucial in microbiology as they facilitate the retrieval and comparison of genomic data across different databases and studies. As an aquatic microorganism, Idiomarina planktonica is likely to play a significant role in its ecosystem, contributing to nutrient cycling and influencing the dynamics of microbial communities in marine environments. Its capacity to adapt to specific environmental conditions may enhance its ecological relevance, particularly in the context of planktonic populations. Understanding the genetic composition and ecological roles of strains like Idiomarina planktonica CGMCC 1.12458 can provide valuable insights into marine microbiology and the functioning of aquatic ecosystems. The single replicon feature may allow for a focused study on its metabolic pathways and ecological interactions, shedding light on its contribution to marine biodiversity and ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyIdiomarinaceae
GenusPseudidiomarina
SpeciesPseudidiomarina planktonica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Idiomarina planktonica strain CGMCC 1.12458 genome assembly,

Gene Summary

Adenine Count

654366 bp

Thymine Count

659272 bp

Guanine Count

644957 bp

Cytosine Count

616317 bp

Genome Length

2574939 bp

Protein-coding Genes

2386 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
multidrug efflux pump subunit acrbSAMN06297229_1466Not AvailablePositive1529598 - 1532828116742.0
multidrug efflux pump subunit acrbSAMN06297229_1467Not AvailablePositive1532825 - 1535902113279.0
3-deoxy-manno-octulosonate cytidylyltransferase (cmp-kdo synthetase)SAMN06297229_1468Not AvailableNegative1535924 - 153667927664.8
hypothetical proteinSAMN06297229_1469Not AvailableNegative1536676 - 15368737353.02
lipid-a-disaccharide kinaseSAMN06297229_1470Not AvailableNegative1536863 - 153788237738.5
atp-binding cassette, subfamily b, msbaSAMN06297229_1471Not AvailableNegative1537882 - 153963064836.6
competence protein comecSAMN06297229_1472Not AvailableNegative1539688 - 154200386796.7
hypothetical proteinSAMN06297229_1473Not AvailablePositive1542033 - 154255719810.8
lipoprotein-releasing system permease proteinSAMN06297229_1474Not AvailableNegative1542554 - 154379244758.0
lipoprotein-releasing system atp-binding proteinSAMN06297229_1475Not AvailableNegative1543794 - 154448324790.8

Displaying genes 1461 – 1470 of 2439 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.