Arenibacter troitsensis strain DSM 19835

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Arenibacter

Description

Arenibacter troitsensis strain DSM 19835 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain has been cataloged with a single replicon, indicating a streamlined genomic structure. The genomic data for this strain is accessible under the accession number FXAO00000000.1. As a member of the genus Arenibacter, this organism is likely to inhabit marine environments, which is common among bacteria in this group. While specific ecological roles or interactions are not detailed, Gram-negative bacteria such as A. troitsensis are often involved in nutrient cycling and may contribute to the degradation of organic materials in their ecosystems. The classification as Gram-negative suggests a distinctive cell wall structure, which influences its interactions with the environment and other microorganisms. This structural characteristic can confer advantages such as resistance to certain antibiotics and the ability to thrive in various ecological niches. In summary, Arenibacter troitsensis strain DSM 19835 exemplifies the diversity of marine bacteria, showcasing key traits such as its Gram-negative nature, rod shape, and single replicon genome. Understanding these features can provide insights into the ecological roles of similar bacteria in marine ecosystems, particularly in processes related to nutrient cycling and organic matter decomposition.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusArenibacter
SpeciesArenibacter troitsensis
Strainstrain DSM 19835

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Arenibacter troitsensis strain DSM 19835 genome assembly, contig:

Gene Summary

Adenine Count

1606259 bp

Thymine Count

1584636 bp

Guanine Count

1037243 bp

Cytosine Count

1051612 bp

Genome Length

5287600 bp

Protein-coding Genes

4360 genes

Non-Coding Genes

41 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
choline dehydrogenaseSAMN03080602_02615Not AvailableNegative3122937 - 312465863570.9
sugar phosphate isomerase/epimeraseSAMN03080602_02616Not AvailableNegative3124915 - 312574831102.5
gluconate 2-dehydrogenase subunit 3SAMN03080602_02617Not AvailableNegative3125791 - 312649825976.5
choline dehydrogenaseSAMN03080602_02618Not AvailableNegative3126503 - 312822163698.6
hypothetical proteinSAMN03080602_02619Not AvailableNegative3128439 - 313049979140.5
alpha/beta hydrolase family proteinSAMN03080602_02620Not AvailableNegative3130639 - 313137027523.1
2-dehydro-3-deoxygluconokinaseSAMN03080602_02621Not AvailablePositive3131646 - 313266837471.5
2-dehydro-3-deoxyphosphogluconate aldolase / (4s)-4-hydroxy-2-oxoglutarate aldolaseSAMN03080602_02622Not AvailablePositive3132683 - 313335124025.2
mannonate dehydrataseSAMN03080602_02623Not AvailableNegative3133476 - 313466344435.3
glucosamine-6-phosphate deaminaseSAMN03080602_02624Not AvailablePositive3134927 - 313685572855.1

Displaying genes 2611 – 2620 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.