Rhizobium oryzae strain B4P

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Xaviernesmea

Description

Rhizobium oryzae strain B4P is characterized by having a single replicon, which is significant for its genomic organization and stability. The strain is cataloged under the accession number FXAF00000000.1, providing a reference point for researchers studying its genetic and functional properties. As a member of the Rhizobium genus, R. oryzae is likely involved in symbiotic relationships, particularly with leguminous plants. This symbiotic association is crucial for nitrogen fixation, a process that enhances soil fertility and supports plant growth. Although specific traits of strain B4P, such as its efficiency in nitrogen fixation or its host range, are not provided, the genus is known for its beneficial interactions with plants, suggesting that R. oryzae may contribute positively to agricultural ecosystems. Understanding the genomic characteristics of Rhizobium oryzae strain B4P can lead to insights into its metabolic capabilities and ecological roles. The presence of a single replicon may also indicate streamlined evolutionary adaptations, potentially enhancing its survival and efficiency in varied environments. Further research into this strain could elucidate its contributions to soil health and plant productivity, reinforcing the importance of microbial diversity in sustainable agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusXaviernesmea
SpeciesXaviernesmea oryzae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium oryzae strain B4P genome assembly, contig:

Gene Summary

Adenine Count

1128943 bp

Thymine Count

1131630 bp

Guanine Count

1898444 bp

Cytosine Count

1906238 bp

Genome Length

6065255 bp

Protein-coding Genes

5641 genes

Non-Coding Genes

122 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tripartite atp-independent transporter solute receptor, dctp familySAMN02982989_4152Not AvailableNegative5710654 - 571166736702.3
trap transporter, dctm subunitSAMN02982989_4153Not AvailableNegative5711738 - 571301844986.8
trap-type c4-dicarboxylate transport system, small permease componentSAMN02982989_4154Not AvailableNegative5713030 - 571359620311.2
transcriptional regulator, tetr familySAMN02982989_4155Not AvailablePositive5713891 - 571453824351.1
hypothetical proteinSAMN02982989_4156Not AvailableNegative5714596 - 571491612171.5
dna-binding transcriptional regulator, lysr familySAMN02982989_4157Not AvailableNegative5715031 - 571596033877.6
permease of the drug/metabolite transporter (dmt) superfamilySAMN02982989_4158Not AvailablePositive5716046 - 571695431369.3
predicted secreted zn-dependent proteaseSAMN02982989_4159Not AvailableNegative5716961 - 571756922563.5
serine protease, s1-c subfamily, contains c-terminal pdz domainSAMN02982989_4160Not AvailableNegative5717679 - 571863833143.6
iron complex outermembrane recepter proteinSAMN02982989_4161Not AvailablePositive5718907 - 572099477094.2

Displaying genes 5421 – 5430 of 5763 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.