Rhizobium oryzae strain B4P

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Xaviernesmea

Description

Rhizobium oryzae strain B4P is characterized by having a single replicon, which is significant for its genomic organization and stability. The strain is cataloged under the accession number FXAF00000000.1, providing a reference point for researchers studying its genetic and functional properties. As a member of the Rhizobium genus, R. oryzae is likely involved in symbiotic relationships, particularly with leguminous plants. This symbiotic association is crucial for nitrogen fixation, a process that enhances soil fertility and supports plant growth. Although specific traits of strain B4P, such as its efficiency in nitrogen fixation or its host range, are not provided, the genus is known for its beneficial interactions with plants, suggesting that R. oryzae may contribute positively to agricultural ecosystems. Understanding the genomic characteristics of Rhizobium oryzae strain B4P can lead to insights into its metabolic capabilities and ecological roles. The presence of a single replicon may also indicate streamlined evolutionary adaptations, potentially enhancing its survival and efficiency in varied environments. Further research into this strain could elucidate its contributions to soil health and plant productivity, reinforcing the importance of microbial diversity in sustainable agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusXaviernesmea
SpeciesXaviernesmea oryzae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium oryzae strain B4P genome assembly, contig:

Gene Summary

Adenine Count

1128943 bp

Thymine Count

1131630 bp

Guanine Count

1898444 bp

Cytosine Count

1906238 bp

Genome Length

6065255 bp

Protein-coding Genes

5641 genes

Non-Coding Genes

122 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)SAMN02982989_1284Not AvailablePositive2284567 - 228540929750.8
poly(3-hydroxybutyrate) depolymeraseSAMN02982989_1285Not AvailablePositive2285704 - 228698748373.4
protein of unknown functionSAMN02982989_1286Not AvailablePositive2287135 - 228755716626.8
hypothetical proteinSAMN02982989_1287Not AvailablePositive2287650 - 228841128913.3
phosphoribosylanthranilate isomeraseSAMN02982989_1288Not AvailablePositive2289048 - 228970423260.9
tryptophan synthase, beta chainSAMN02982989_1289Not AvailablePositive2289658 - 229093546194.4
tryptophan synthase, alpha chainSAMN02982989_1290Not AvailablePositive2290937 - 229177629098.4
acetyl-coa carboxylase carboxyltransferase subunit betaSAMN02982989_1291Not AvailablePositive2291816 - 229270632651.1
dihydrofolate synthase / folylpolyglutamate synthaseSAMN02982989_1292Not AvailablePositive2292739 - 229409148197.0
thioredoxinSAMN02982989_1293Not AvailableNegative2294206 - 229452611264.5

Displaying genes 2211 – 2220 of 5763 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.