Rhizobium oryzae strain B4P

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Xaviernesmea

Description

Rhizobium oryzae strain B4P is characterized by having a single replicon, which is significant for its genomic organization and stability. The strain is cataloged under the accession number FXAF00000000.1, providing a reference point for researchers studying its genetic and functional properties. As a member of the Rhizobium genus, R. oryzae is likely involved in symbiotic relationships, particularly with leguminous plants. This symbiotic association is crucial for nitrogen fixation, a process that enhances soil fertility and supports plant growth. Although specific traits of strain B4P, such as its efficiency in nitrogen fixation or its host range, are not provided, the genus is known for its beneficial interactions with plants, suggesting that R. oryzae may contribute positively to agricultural ecosystems. Understanding the genomic characteristics of Rhizobium oryzae strain B4P can lead to insights into its metabolic capabilities and ecological roles. The presence of a single replicon may also indicate streamlined evolutionary adaptations, potentially enhancing its survival and efficiency in varied environments. Further research into this strain could elucidate its contributions to soil health and plant productivity, reinforcing the importance of microbial diversity in sustainable agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusXaviernesmea
SpeciesXaviernesmea oryzae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium oryzae strain B4P genome assembly, contig:

Gene Summary

Adenine Count

1128943 bp

Thymine Count

1131630 bp

Guanine Count

1898444 bp

Cytosine Count

1906238 bp

Genome Length

6065255 bp

Protein-coding Genes

5641 genes

Non-Coding Genes

122 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dephospho-coa kinaseSAMN02982989_1274Not AvailablePositive2275687 - 227629522119.9
dna polymerase-3 subunit epsilonSAMN02982989_1275Not AvailablePositive2276288 - 227700426216.4
preprotein translocase subunit secbSAMN02982989_1276Not AvailableNegative2277057 - 227753317395.8
upf0716 protein fxsaSAMN02982989_1277Not AvailableNegative2277659 - 227818918934.5
predicted lipid-binding transport protein, tim44 familySAMN02982989_1278Not AvailablePositive2278314 - 227901225727.4
membrane-bound lytic murein transglycosylase aSAMN02982989_1279Not AvailablePositive2279009 - 228012740815.3
dna-nicking endonuclease, smr domainSAMN02982989_1280Not AvailablePositive2280124 - 228073222739.3
transcriptional regulator, contains xre-family hth domainSAMN02982989_1281Not AvailablePositive2280729 - 228109413539.4
dna gyrase subunit bSAMN02982989_1282Not AvailablePositive2281232 - 228366789403.3
nitroreductaseSAMN02982989_1283Not AvailableNegative2283810 - 228440922149.2

Displaying genes 2201 – 2210 of 5763 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.