Desulfovibrio sp. K3S

Gram-negativeCurved rodanaerobic

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Desulfovibrio

Description

Desulfovibrio sp. K3S is a Gram-negative bacterium that resides primarily in the cecal digesta of its hosts, which include Homo sapiens (humans) and Coryphaenoides yaquinae (a species of fish). This organism is characterized by the presence of flagella, suggesting it possesses motility that may aid in navigating the complex gut environment. The genome of Desulfovibrio sp. K3S is composed of a single replicon, indicating a relatively streamlined genetic structure. Its accession number is FWZU00000000.1, which is essential for reference and identification in genomic databases. Desulfovibrio species, including K3S, are known for their role in sulfate reduction and contribute to the sulfur cycle within their habitats. Their presence in the gut microbiome may have implications for metabolic processes, including the degradation of organic matter and the modulation of host health. The interactions between Desulfovibrio sp. K3S and its hosts can provide insights into the microbial ecology of the gut and the potential effects on nutrient absorption and overall gut health. Understanding the specific functions and contributions of Desulfovibrio sp. K3S within these ecosystems can enhance our knowledge of microbial dynamics in both human and marine environments.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio gilichinskyi
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeCurved rod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangemesophilic
Habitatcecal digesta; gut
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Sus scrofa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Desulfovibrio sp. K3S genome assembly, contig: Ga0139011_114,

Gene Summary

Adenine Count

1104753 bp

Thymine Count

1180632 bp

Guanine Count

878740 bp

Cytosine Count

798413 bp

Genome Length

3962538 bp

Protein-coding Genes

3494 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide/nickel transport system atp-binding protein/oligopeptide transport system atp-binding proteinSAMN06295933_0432Not AvailableNegative444763 - 44571935125.8
peptide/nickel transport system atp-binding proteinSAMN06295933_0433Not AvailableNegative445736 - 44669834922.0
methylenetetrahydrofolate--trna-(uracil-5-)- methyltransferaseSAMN06295933_0434Not AvailablePositive446834 - 44815648645.0
dihydrodipicolinate synthaseSAMN06295933_0435Not AvailableNegative448254 - 44913231485.3
integration host factor subunit betaSAMN06295933_0437Not AvailableNegative450043 - 45031810204.3
flagellar biosynthesis protein flhgSAMN06295933_0438Not AvailableNegative450414 - 45123830111.0
diguanylate cyclase (ggdef) domain-containing proteinSAMN06295933_0439Not AvailableNegative451255 - 45210632106.4
apolipoprotein n-acyltransferaseSAMN06295933_0441Not AvailableNegative453220 - 45476456592.5
magnesium and cobalt transporterSAMN06295933_0442Not AvailableNegative454765 - 45558330428.3
hypothetical proteinSAMN06295933_0443Not AvailableNegative455695 - 45674139448.6

Displaying genes 461 – 470 of 3601 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Fatty liverCausesPMC10146906

Displaying health effects 1 – 1 of 1 in total