Desulfovibrio sp. K3S

Gram-negativeCurved rodanaerobic

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Desulfovibrio

Description

Desulfovibrio sp. K3S is a Gram-negative bacterium that resides primarily in the cecal digesta of its hosts, which include Homo sapiens (humans) and Coryphaenoides yaquinae (a species of fish). This organism is characterized by the presence of flagella, suggesting it possesses motility that may aid in navigating the complex gut environment. The genome of Desulfovibrio sp. K3S is composed of a single replicon, indicating a relatively streamlined genetic structure. Its accession number is FWZU00000000.1, which is essential for reference and identification in genomic databases. Desulfovibrio species, including K3S, are known for their role in sulfate reduction and contribute to the sulfur cycle within their habitats. Their presence in the gut microbiome may have implications for metabolic processes, including the degradation of organic matter and the modulation of host health. The interactions between Desulfovibrio sp. K3S and its hosts can provide insights into the microbial ecology of the gut and the potential effects on nutrient absorption and overall gut health. Understanding the specific functions and contributions of Desulfovibrio sp. K3S within these ecosystems can enhance our knowledge of microbial dynamics in both human and marine environments.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio gilichinskyi
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeCurved rod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangemesophilic
Habitatcecal digesta; gut
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Sus scrofa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Desulfovibrio sp. K3S genome assembly, contig: Ga0139011_114,

Gene Summary

Adenine Count

1104753 bp

Thymine Count

1180632 bp

Guanine Count

878740 bp

Cytosine Count

798413 bp

Genome Length

3962538 bp

Protein-coding Genes

3494 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
grpb domain, predicted nucleotidyltransferase, upf0157 familySAMN06295933_1819Not AvailablePositive1949632 - 195021622630.4
trna pseudouridine32 synthase / 23s rrna pseudouridine746 synthaseSAMN06295933_1820Not AvailableNegative1950226 - 195087024308.7
predicted protein ydei with ob-fold, bof familySAMN06295933_1821Not AvailablePositive1951499 - 195184011879.4
two-component system, narl family, sensor histidine kinase baraSAMN06295933_1822Not AvailableNegative1951993 - 195430886328.8
basic membrane protein aSAMN06295933_1823Not AvailableNegative1954332 - 195546241462.4
threonine/homoserine efflux transporter rhtaSAMN06295933_1824Not AvailableNegative1955547 - 195650333485.0
transcriptional regulator, arac familySAMN06295933_1825Not AvailableNegative1956599 - 195741429964.8
predicted amino acid racemaseSAMN06295933_1826Not AvailableNegative1957619 - 195867738398.6
uncharacterized conserved protein, nad-dependent epimerase/dehydratase familySAMN06295933_1827Not AvailableNegative1958674 - 195975639675.8
hypothetical proteinSAMN06295933_1828Not AvailablePositive1960039 - 196098035859.7

Displaying genes 1801 – 1810 of 3601 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Fatty liverCausesPMC10146906

Displaying health effects 1 – 1 of 1 in total