Desulfovibrio sp. K3S

Gram-negativeCurved rodanaerobic

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Desulfovibrio

Description

Desulfovibrio sp. K3S is a Gram-negative bacterium that resides primarily in the cecal digesta of its hosts, which include Homo sapiens (humans) and Coryphaenoides yaquinae (a species of fish). This organism is characterized by the presence of flagella, suggesting it possesses motility that may aid in navigating the complex gut environment. The genome of Desulfovibrio sp. K3S is composed of a single replicon, indicating a relatively streamlined genetic structure. Its accession number is FWZU00000000.1, which is essential for reference and identification in genomic databases. Desulfovibrio species, including K3S, are known for their role in sulfate reduction and contribute to the sulfur cycle within their habitats. Their presence in the gut microbiome may have implications for metabolic processes, including the degradation of organic matter and the modulation of host health. The interactions between Desulfovibrio sp. K3S and its hosts can provide insights into the microbial ecology of the gut and the potential effects on nutrient absorption and overall gut health. Understanding the specific functions and contributions of Desulfovibrio sp. K3S within these ecosystems can enhance our knowledge of microbial dynamics in both human and marine environments.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio gilichinskyi
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeCurved rod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangemesophilic
Habitatcecal digesta; gut
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Sus scrofa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Desulfovibrio sp. K3S genome assembly, contig: Ga0139011_114,

Gene Summary

Adenine Count

1104753 bp

Thymine Count

1180632 bp

Guanine Count

878740 bp

Cytosine Count

798413 bp

Genome Length

3962538 bp

Protein-coding Genes

3494 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenaseSAMN06295933_1779Not AvailableNegative1897733 - 189912450277.1
amino acid abc transporter substrate-binding protein, paat familySAMN06295933_1780Not AvailablePositive1899804 - 190058928668.5
polar amino acid transport system permease proteinSAMN06295933_1781Not AvailablePositive1900641 - 190129724386.7
amino acid abc transporter atp-binding protein, paat familySAMN06295933_1782Not AvailablePositive1901349 - 190208026807.5
transcriptional regulator containing gaf, aaa-type atpase, and dna-binding fis domainsSAMN06295933_1783Not AvailableNegative1902195 - 190383261085.5
hpp family proteinSAMN06295933_1784Not AvailableNegative1903987 - 190475427621.6
carbon-monoxide dehydrogenase catalytic subunitSAMN06295933_1785Not AvailableNegative1904893 - 190690573889.9
hamp domain-containing proteinSAMN06295933_1786Not AvailablePositive1907271 - 190870153177.2
dna-binding transcriptional response regulator, ntrc family, contains rec, aaa-type atpase, and a fis-type dna-binding domainsSAMN06295933_1787Not AvailablePositive1908673 - 191003751282.1
hypothetical proteinSAMN06295933_1788Not AvailablePositive1910499 - 191093316424.7

Displaying genes 1761 – 1770 of 3601 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Fatty liverCausesPMC10146906

Displaying health effects 1 – 1 of 1 in total