Desulfovibrio sp. K3S

Gram-negativeCurved rodanaerobic

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Desulfovibrio

Description

Desulfovibrio sp. K3S is a Gram-negative bacterium that resides primarily in the cecal digesta of its hosts, which include Homo sapiens (humans) and Coryphaenoides yaquinae (a species of fish). This organism is characterized by the presence of flagella, suggesting it possesses motility that may aid in navigating the complex gut environment. The genome of Desulfovibrio sp. K3S is composed of a single replicon, indicating a relatively streamlined genetic structure. Its accession number is FWZU00000000.1, which is essential for reference and identification in genomic databases. Desulfovibrio species, including K3S, are known for their role in sulfate reduction and contribute to the sulfur cycle within their habitats. Their presence in the gut microbiome may have implications for metabolic processes, including the degradation of organic matter and the modulation of host health. The interactions between Desulfovibrio sp. K3S and its hosts can provide insights into the microbial ecology of the gut and the potential effects on nutrient absorption and overall gut health. Understanding the specific functions and contributions of Desulfovibrio sp. K3S within these ecosystems can enhance our knowledge of microbial dynamics in both human and marine environments.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio gilichinskyi
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeCurved rod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangemesophilic
Habitatcecal digesta; gut
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Sus scrofa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Desulfovibrio sp. K3S genome assembly, contig: Ga0139011_114,

Gene Summary

Adenine Count

1104753 bp

Thymine Count

1180632 bp

Guanine Count

878740 bp

Cytosine Count

798413 bp

Genome Length

3962538 bp

Protein-coding Genes

3494 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-glucose 4-epimeraseSAMN06295933_1677Not AvailablePositive1769707 - 177066634995.6
hd-like signal output (hdod) domain, no enzymatic activitySAMN06295933_1678Not AvailablePositive1770720 - 177179639471.3
glyoxylase, beta-lactamase superfamily iiSAMN06295933_1679Not AvailableNegative1771852 - 177323450976.4
desulfoferrodoxinSAMN06295933_1680Not AvailableNegative1773261 - 177368315448.4
pas domain s-box-containing proteinSAMN06295933_1681Not AvailablePositive1773980 - 1776655100200.0
indolepyruvate decarboxylaseSAMN06295933_1682Not AvailableNegative1776665 - 177832060209.5
hemerythrinSAMN06295933_1683Not AvailableNegative1778467 - 177887715830.7
hd domain-containing proteinSAMN06295933_1684Not AvailableNegative1778914 - 178070167188.4
hypothetical proteinSAMN06295933_1685Not AvailableNegative1780968 - 178141716048.6
nb-arc domain-containing proteinSAMN06295933_1686Not AvailablePositive1781729 - 178414991708.2

Displaying genes 1661 – 1670 of 3601 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Fatty liverCausesPMC10146906

Displaying health effects 1 – 1 of 1 in total