Ruminococcaceae bacterium strain KHP2

Obligate anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium strain KHP2 is an uncharacterized member of the Ruminococcaceae family. This strain is classified as an obligate anaerobe, meaning it thrives in environments devoid of oxygen. Its genetic material comprises a single replicon, which indicates a relatively simple genomic organization. Ruminococcaceae bacteria are commonly associated with the digestive systems of herbivorous animals, particularly in ruminants such as cattle (Bos). This association is critical for the breakdown of complex carbohydrates, enabling these animals to extract nutrients from plant materials effectively. The strain KHP2 has been cataloged under the accession number FWXP00000000.1, which provides a reference for further genetic and functional studies. The uncharacterized nature of this strain suggests that there may be specific metabolic pathways or ecological roles yet to be elucidated, particularly in its interactions within the gut microbiome of its Bos hosts. Understanding the traits of Ruminococcaceae bacterium strain KHP2 can provide insights into its potential contributions to the health and digestive efficiency of ruminants. The anaerobic lifestyle of this strain likely plays a significant role in the fermentation processes critical to nutrient absorption in these animals, thus highlighting the importance of microbial diversity in maintaining the overall health of herbivorous livestock.

Profile

Physiology
Gram staining propertiesUncharacterized
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsObligate anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium strain KHP2 genome assembly, contig:

Gene Summary

Adenine Count

807223 bp

Thymine Count

788760 bp

Guanine Count

714401 bp

Cytosine Count

667215 bp

Genome Length

2977599 bp

Protein-coding Genes

2738 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
iron complex transport system atp-binding proteinSAMN06296952_1076Not AvailablePositive1180916 - 118162025725.8
caax protease self-immunitySAMN06296952_1077Not AvailableNegative1181580 - 118380882013.4
sodium transport system atp-binding proteinSAMN06296952_1078Not AvailableNegative1183798 - 118455027531.3
abc-type na+ efflux pump, permease componentSAMN06296952_1079Not AvailableNegative1184547 - 118582748775.1
Trna-cysNot AvailableNot AvailablePositive1185925 - 1185999Not Available
hypothetical proteinSAMN06296952_1081Not AvailablePositive1186106 - 118705936219.9
glycosyl hydrolase family 26SAMN06296952_1082Not AvailablePositive1187059 - 118815341362.1
Trna-glyNot AvailableNot AvailablePositive1188144 - 1188219Not Available
hypothetical proteinSAMN06296952_1084Not AvailablePositive1188475 - 11887239430.29
hypothetical proteinSAMN06296952_1085Not AvailablePositive1188736 - 119075173676.8

Displaying genes 1071 – 1080 of 2786 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

223 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da

Displaying 1–10 of 223 metabolites

Health Effects

No health effects information available for this bacterium.