Mycobacterium abscessus subsp. abscessus strain 1000

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Mycobacteriaceae

Genus

Mycobacteroides

Description

Mycobacterium abscessus subsp. abscessus strain 1000 is a rod-shaped bacterium known for its presence in chloraminated water. This organism possesses true flagella, contributing to its motility. It contains a single replicon, which is a key trait in its genetic structure. M. abscessus subsp. abscessus has a wide host range, affecting various species including Homo sapiens, Metazoa, Aves, Phocidae, Rodentia, and Panthera leo. In humans, it is associated with significant health risks, leading to conditions such as endocarditis, peritonitis, and a variety of lung infections, including chronic pulmonary infections and non-cavitary pneumonia. The bacterium is also implicated in skin infections and localized lesions, highlighting its potential to cause widespread disease. The health effects of this strain extend beyond individual cases, contributing to mycobacterial diseases and chronic infections, particularly in immunocompromised individuals. In the context of peritoneal dialysis (PD), it can lead to PD-associated peritonitis, demonstrating its clinical relevance in healthcare settings. The ecological distribution of M. abscessus subsp. abscessus in chloraminated water suggests a potential link between environmental exposure and human infection. Understanding its habitat and host interactions is crucial for public health, particularly in water quality management and infection control strategies. This strain exemplifies the importance of environmental microbiology in understanding the dynamics of pathogenic microorganisms in relation to human health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycobacteroides
SpeciesMycobacteroides abscessus
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatchloraminated water
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Aves
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Mycobacterium abscessus subsp. abscessus strain 1000


Gene Summary

Adenine Count

1937024 bp

Thymine Count

1939578 bp

Guanine Count

2099634 bp

Cytosine Count

2058728 bp

Genome Length

8076405 bp

Protein-coding Genes

7179 genes

Non-Coding Genes

109 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive4113677 - 4113704Not Available
IntegraseSAMEA2275726_04100Not AvailableNegative4113729 - 411487741794.8
Hypothetical proteinSAMEA2275726_04101Not AvailableNegative4114864 - 411551123092.6
Helix-turn-helix domain proteinSAMEA2275726_04102Not AvailablePositive4115758 - 41159647550.96
uncharacterised proteinSAMEA2275726_04103Not AvailablePositive4115964 - 41161286093.94
uncharacterised proteinSAMEA2275726_04104Not AvailablePositive4116128 - 411645111457.6
uncharacterised proteinSAMEA2275726_04105Not AvailablePositive4116448 - 411682813651.1
phirv1 phage proteinSAMEA2275726_04106Not AvailablePositive4116825 - 411714211600.5
Gp85SAMEA2275726_04107Not AvailablePositive4117139 - 411870756604.5
uncharacterised proteinSAMEA2275726_04108Not AvailablePositive4118704 - 41189378520.27

Displaying genes 1 – 10 of 7288 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Cervical lymphadenitisCausesPMC10928384
Lung infectionsCausesPMC12090666
Skin infectionCausesPMC12090666
Lung infectionCausesPMC12090666
Peritoneal dialysis (pd)-associated peritonitisCausesPMC7953774
PeritonitisCausesPMC7953774
Chronic pulmonary infectionsCausesPMC9112878
Chronic infectionsCausesPMC9112878
Pulmonary and cutaneous infectionsCausesPMC4222108
Pulmonary diseaseCausesPMC5759224

Displaying health effects 11 – 20 of 24 in total