Desulfovibrio gracilis DSM 16080

rodanaerobic

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Paucidesulfovibrio

Description

Desulfovibrio gracilis DSM 16080 is an anaerobic, rod-shaped bacterium that thrives in mesophilic conditions, with an optimal growth temperature of 37°C. This organism is characterized by its inability to form spores, which indicates a reliance on specific environmental conditions for survival and replication. It possesses a single replicon, suggesting a streamlined genomic structure that may facilitate its adaptation to anaerobic habitats. As a member of the Desulfovibrio genus, D. gracilis is likely involved in the biogeochemical cycling of sulfur compounds, particularly in anaerobic environments. The capacity of this bacterium to utilize sulfate as a terminal electron acceptor allows it to contribute to the reduction of sulfate to hydrogen sulfide, a process critical in various ecological contexts, including the degradation of organic matter in sediments and the cycling of nutrients in aquatic ecosystems. The accession number for its genetic material is FUYC00000000.1, which may provide further insights into its genetic makeup and metabolic pathways. Understanding the traits and ecological roles of D. gracilis can enhance our knowledge of microbial communities in anaerobic environments and their significance in global biogeochemical cycles.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusPaucidesulfovibrio
SpeciesPaucidesulfovibrio gracilis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Desulfovibrio gracilis DSM 16080 genome assembly, contig:

Gene Summary

Adenine Count

661937 bp

Thymine Count

659652 bp

Guanine Count

934806 bp

Cytosine Count

923086 bp

Genome Length

3179481 bp

Protein-coding Genes

2871 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nucleotide-binding universal stress protein, uspa familySAMN02745704_00348Not AvailablePositive396943 - 39739216553.1
23s rrna (uracil1939-c5)-methyltransferaseSAMN02745704_00349Not AvailableNegative397480 - 39883849867.8
hypothetical proteinSAMN02745704_00350Not AvailablePositive398870 - 39928316542.3
hypothetical proteinSAMN02745704_00351Not AvailablePositive399283 - 39958211531.1
protein of unknown functionSAMN02745704_00352Not AvailableNegative399566 - 40038431176.4
uncharacterized conserved protein, contains gh25 family domainSAMN02745704_00353Not AvailablePositive400638 - 40141128257.3
nickel transport proteinSAMN02745704_00354Not AvailablePositive401412 - 40177713470.0
hd domain-containing proteinSAMN02745704_00355Not AvailableNegative401927 - 40293739008.5
pyruvate kinaseSAMN02745704_00356Not AvailableNegative402940 - 40435551875.7
mraz proteinSAMN02745704_00357Not AvailablePositive404705 - 40517217741.4

Displaying genes 351 – 360 of 2928 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.