Desulfovibrio gracilis DSM 16080

rodanaerobic

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Paucidesulfovibrio

Description

Desulfovibrio gracilis DSM 16080 is an anaerobic, rod-shaped bacterium that thrives in mesophilic conditions, with an optimal growth temperature of 37°C. This organism is characterized by its inability to form spores, which indicates a reliance on specific environmental conditions for survival and replication. It possesses a single replicon, suggesting a streamlined genomic structure that may facilitate its adaptation to anaerobic habitats. As a member of the Desulfovibrio genus, D. gracilis is likely involved in the biogeochemical cycling of sulfur compounds, particularly in anaerobic environments. The capacity of this bacterium to utilize sulfate as a terminal electron acceptor allows it to contribute to the reduction of sulfate to hydrogen sulfide, a process critical in various ecological contexts, including the degradation of organic matter in sediments and the cycling of nutrients in aquatic ecosystems. The accession number for its genetic material is FUYC00000000.1, which may provide further insights into its genetic makeup and metabolic pathways. Understanding the traits and ecological roles of D. gracilis can enhance our knowledge of microbial communities in anaerobic environments and their significance in global biogeochemical cycles.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusPaucidesulfovibrio
SpeciesPaucidesulfovibrio gracilis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Desulfovibrio gracilis DSM 16080 genome assembly, contig:

Gene Summary

Adenine Count

661937 bp

Thymine Count

659652 bp

Guanine Count

934806 bp

Cytosine Count

923086 bp

Genome Length

3179481 bp

Protein-coding Genes

2871 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
biotin-protein ligase, n terminalSAMN02745704_02880Not AvailableNegative3109505 - 311071944720.8
valyl-trna synthetaseSAMN02745704_02881Not AvailablePositive3110882 - 3113542101397.0
uroporphyrinogen iii methyltransferase / synthaseSAMN02745704_02882Not AvailablePositive3113693 - 311521055188.0
l-threonine o-3-phosphate decarboxylase /adenosylcobyric acid synthase (glutamine-hydrolysing)SAMN02745704_02883Not AvailableNegative3115997 - 311866397194.0
serine/threonine protein kinaseSAMN02745704_02884Not AvailableNegative3118660 - 312002150299.2
pas domain s-box-containing proteinSAMN02745704_02885Not AvailableNegative3120125 - 312232082150.4
diaminopimelate epimeraseSAMN02745704_02886Not AvailablePositive3122501 - 312337331200.0
hypothetical proteinSAMN02745704_02887Not AvailableNegative3123327 - 312392421325.4
rhs repeat-associated core domain-containing proteinSAMN02745704_02888Not AvailableNegative3124128 - 312554051881.6
hd domain-containing proteinSAMN02745704_02889Not AvailableNegative3125849 - 312705444260.9

Displaying genes 2871 – 2880 of 2928 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.