Sediminibacterium ginsengisoli strain DSM 22335

rodfacultative aerobe/anaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Sediminibacterium

Description

Sediminibacterium ginsengisoli strain DSM 22335 is a Gram-negative, motile, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics. This means it can thrive in both the presence and absence of oxygen, allowing it to adapt to various environmental conditions. The optimal growth temperature for this strain is 29°C, placing it within the mesophilic range, which typically encompasses organisms that grow best at moderate temperatures. Sediminibacterium ginsengisoli is characterized by having a single replicon and does not form spores, indicating a strategy of reproduction that relies on binary fission rather than sporulation. This trait may influence its survival strategies and interactions within its ecological niche. The strain is cataloged under the accession number FUWH00000000.1, which provides a reference point for further studies and genetic analyses. The combination of its motility, facultative lifestyle, and mesophilic adaptation suggests that Sediminibacterium ginsengisoli may play a significant role in the microbial communities of its habitat, particularly in environments where oxygen levels fluctuate. Its ability to thrive in varying conditions may contribute to nutrient cycling and the maintenance of ecological balance in its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusSediminibacterium
SpeciesSediminibacterium ginsengisoli
Strainstrain DSM 22335

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitymotile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sediminibacterium ginsengisoli strain DSM 22335 genome assembly,

Gene Summary

Adenine Count

1097857 bp

Thymine Count

1093381 bp

Guanine Count

940539 bp

Cytosine Count

950860 bp

Genome Length

4089980 bp

Protein-coding Genes

3586 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycosyltransferase involved in cell wall bisynthesisSAMN04488132_10179Not AvailableNegative67009 - 6807340831.0
glycosyl transferase family 2SAMN04488132_10180Not AvailableNegative68111 - 6905836532.3
lao/ao transport system kinaseSAMN04488132_10181Not AvailableNegative69101 - 7000033037.1
hypothetical proteinSAMN04488132_10182Not AvailableNegative70031 - 7090334310.1
hypothetical proteinSAMN04488132_10183Not AvailablePositive70999 - 7164024284.7
type iii pantothenate kinaseSAMN04488132_10184Not AvailablePositive71651 - 7238527105.0
long-chain fatty acid transport proteinSAMN04488132_10185Not AvailablePositive72351 - 7372450976.1
lps export abc transporter protein lptcSAMN04488132_10186Not AvailablePositive73717 - 7434923751.4
voltage-dependent potassium channel beta subunit, animalSAMN04488132_10187Not AvailablePositive74423 - 7541237408.7
rna polymerase sigma-70 factor, ecf subfamilySAMN04488132_10188Not AvailablePositive75564 - 7611521659.6

Displaying genes 81 – 90 of 3631 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.