Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Chitinophagia
Order
Chitinophagales
Family
Chitinophagaceae
Genus
Sediminibacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Chitinophagia |
| Order | Chitinophagales |
| Family | Chitinophagaceae |
| Genus | Sediminibacterium |
| Species | Sediminibacterium ginsengisoli |
| Strain | strain DSM 22335 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1097857 bp
Thymine Count
1093381 bp
Guanine Count
940539 bp
Cytosine Count
950860 bp
Genome Length
4089980 bp
Protein-coding Genes
3586 genes
Non-Coding Genes
45 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488132_10179 | Not Available | Negative | 67009 - 68073 | 40831.0 |
| glycosyl transferase family 2 | SAMN04488132_10180 | Not Available | Negative | 68111 - 69058 | 36532.3 |
| lao/ao transport system kinase | SAMN04488132_10181 | Not Available | Negative | 69101 - 70000 | 33037.1 |
| hypothetical protein | SAMN04488132_10182 | Not Available | Negative | 70031 - 70903 | 34310.1 |
| hypothetical protein | SAMN04488132_10183 | Not Available | Positive | 70999 - 71640 | 24284.7 |
| type iii pantothenate kinase | SAMN04488132_10184 | Not Available | Positive | 71651 - 72385 | 27105.0 |
| long-chain fatty acid transport protein | SAMN04488132_10185 | Not Available | Positive | 72351 - 73724 | 50976.1 |
| lps export abc transporter protein lptc | SAMN04488132_10186 | Not Available | Positive | 73717 - 74349 | 23751.4 |
| voltage-dependent potassium channel beta subunit, animal | SAMN04488132_10187 | Not Available | Positive | 74423 - 75412 | 37408.7 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488132_10188 | Not Available | Positive | 75564 - 76115 | 21659.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
