Sediminibacterium ginsengisoli strain DSM 22335

rodfacultative aerobe/anaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Sediminibacterium

Description

Sediminibacterium ginsengisoli strain DSM 22335 is a Gram-negative, motile, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics. This means it can thrive in both the presence and absence of oxygen, allowing it to adapt to various environmental conditions. The optimal growth temperature for this strain is 29°C, placing it within the mesophilic range, which typically encompasses organisms that grow best at moderate temperatures. Sediminibacterium ginsengisoli is characterized by having a single replicon and does not form spores, indicating a strategy of reproduction that relies on binary fission rather than sporulation. This trait may influence its survival strategies and interactions within its ecological niche. The strain is cataloged under the accession number FUWH00000000.1, which provides a reference point for further studies and genetic analyses. The combination of its motility, facultative lifestyle, and mesophilic adaptation suggests that Sediminibacterium ginsengisoli may play a significant role in the microbial communities of its habitat, particularly in environments where oxygen levels fluctuate. Its ability to thrive in varying conditions may contribute to nutrient cycling and the maintenance of ecological balance in its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusSediminibacterium
SpeciesSediminibacterium ginsengisoli
Strainstrain DSM 22335

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitymotile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sediminibacterium ginsengisoli strain DSM 22335 genome assembly,

Gene Summary

Adenine Count

1097857 bp

Thymine Count

1093381 bp

Guanine Count

940539 bp

Cytosine Count

950860 bp

Genome Length

4089980 bp

Protein-coding Genes

3586 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
giy-yig catalytic domain-containing proteinSAMN04488132_10139Not AvailableNegative28455 - 2879613129.8
dgqhr domain-containing proteinSAMN04488132_10140Not AvailableNegative28793 - 2992042385.7
hypothetical proteinSAMN04488132_10141Not AvailableNegative30141 - 3051814189.1
protein of unknown functionSAMN04488132_10142Not AvailableNegative30805 - 3127518277.8
Trna-argNot AvailableNot AvailablePositive32235 - 32309Not Available
glutathione peroxidaseSAMN04488132_10144Not AvailablePositive32511 - 3309821759.2
putative tim-barrel protein, nifr3 familySAMN04488132_10145Not AvailableNegative33099 - 3417540212.0
hypothetical proteinSAMN04488132_10146Not AvailablePositive34248 - 3515934026.9
putative signal transducing proteinSAMN04488132_10147Not AvailablePositive35159 - 353657627.25
phosphatidate cytidylyltransferaseSAMN04488132_10148Not AvailablePositive35403 - 3626631648.7

Displaying genes 41 – 50 of 3631 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.