Pontibacter lucknowensis strain DM9

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Pontibacter

Description

Pontibacter lucknowensis strain DM9 is a Gram-negative, rod-shaped bacterium characterized by a single replicon. This strain is cataloged under the accession number FTNM00000000.1. As a member of the Pontibacter genus, which is known for its adaptability to extreme environments, P. lucknowensis strain DM9 may exhibit unique metabolic capabilities. The Gram-negative nature of this bacterium often implicates the presence of a double membrane structure, which can be advantageous for survival in various ecological niches. The presence of only one replicon suggests a streamlined genetic organization, potentially contributing to efficient replication and adaptability. This trait may facilitate its survival in changing environments, a characteristic often observed in bacteria from diverse habitats. In ecological contexts, the adaptability of P. lucknowensis strain DM9 could indicate its role in nutrient cycling or its potential use in bioremediation efforts, particularly in environments where other organisms may struggle to thrive. This strain's specific traits position it as an organism of interest for further study, especially concerning its ecological contributions and potential applications in biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusPontibacter
SpeciesPontibacter lucknowensis
Strainstrain DM9

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pontibacter lucknowensis strain DM9 genome assembly, contig:

Gene Summary

Adenine Count

1117343 bp

Thymine Count

1112934 bp

Guanine Count

1121125 bp

Cytosine Count

1122468 bp

Genome Length

4474059 bp

Protein-coding Genes

3901 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN05421545_0061Not AvailableNegative92282 - 9301627991.1
uncharacterized conserved protein, laba/duf88 familySAMN05421545_0062Not AvailablePositive93290 - 9412031015.1
outer membrane protein beta-barrel domain-containing proteinSAMN05421545_0063Not AvailableNegative94200 - 9482623189.8
ribosomal-protein-serine acetyltransferaseSAMN05421545_0064Not AvailablePositive94934 - 9553022499.0
predicted purr-regulated permease permSAMN05421545_0065Not AvailableNegative95496 - 9659941140.9
peptidase family m28SAMN05421545_0066Not AvailablePositive96711 - 9802748778.9
alanine dehydrogenaseSAMN05421545_0067Not AvailableNegative98117 - 9934944959.3
trna threonylcarbamoyladenosine biosynthesis protein tsaeSAMN05421545_0068Not AvailableNegative99346 - 9975615159.2
response regulator receiver domain-containing proteinSAMN05421545_0069Not AvailableNegative99785 - 10134760797.5
hypothetical proteinSAMN05421545_0070Not AvailablePositive101516 - 10274847235.1

Displaying genes 61 – 70 of 3946 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.