Pontibacter lucknowensis strain DM9

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Pontibacter

Description

Pontibacter lucknowensis strain DM9 is a Gram-negative, rod-shaped bacterium characterized by a single replicon. This strain is cataloged under the accession number FTNM00000000.1. As a member of the Pontibacter genus, which is known for its adaptability to extreme environments, P. lucknowensis strain DM9 may exhibit unique metabolic capabilities. The Gram-negative nature of this bacterium often implicates the presence of a double membrane structure, which can be advantageous for survival in various ecological niches. The presence of only one replicon suggests a streamlined genetic organization, potentially contributing to efficient replication and adaptability. This trait may facilitate its survival in changing environments, a characteristic often observed in bacteria from diverse habitats. In ecological contexts, the adaptability of P. lucknowensis strain DM9 could indicate its role in nutrient cycling or its potential use in bioremediation efforts, particularly in environments where other organisms may struggle to thrive. This strain's specific traits position it as an organism of interest for further study, especially concerning its ecological contributions and potential applications in biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusPontibacter
SpeciesPontibacter lucknowensis
Strainstrain DM9

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pontibacter lucknowensis strain DM9 genome assembly, contig:

Gene Summary

Adenine Count

1117343 bp

Thymine Count

1112934 bp

Guanine Count

1121125 bp

Cytosine Count

1122468 bp

Genome Length

4474059 bp

Protein-coding Genes

3901 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipid-a-disaccharide synthaseSAMN05421545_0010Not AvailableNegative9748 - 1086642762.1
6-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthaseSAMN05421545_0011Not AvailableNegative10950 - 1136616054.3
iron complex transport system permease proteinSAMN05421545_0012Not AvailableNegative11367 - 1237435779.9
iron complex transport system substrate-binding proteinSAMN05421545_0013Not AvailableNegative12371 - 1326734148.2
adp-glyceromanno-heptose 6-epimerase precursorSAMN05421545_0014Not AvailablePositive13377 - 1434236945.6
hypothetical proteinSAMN05421545_0015Not AvailableNegative14438 - 1555342105.5
hypothetical proteinSAMN05421545_0016Not AvailableNegative15695 - 1681342367.4
two component transcriptional regulator, lyttr familySAMN05421545_0018Not AvailablePositive18088 - 1882527518.2
hypothetical proteinSAMN05421545_0019Not AvailableNegative18822 - 22304132492.0
histidine kinase-, dna gyrase b-, and hsp90-like atpaseSAMN05421545_0020Not AvailableNegative22301 - 25954137619.0

Displaying genes 11 – 20 of 3946 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.