Chitinophaga niabensis strain DSM 24787

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga niabensis strain DSM 24787 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is non-motile and demonstrates optimal growth at 29 °C, classifying it as mesophilic. It possesses a single replicon, which is indicative of its genetic organization and cellular processes. The classification of Chitinophaga niabensis within the broader context of microbial ecology highlights its potential role in the decomposition of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. Given its aerobic nature, this bacterium likely contributes to nutrient cycling in its habitat by degrading chitin, which can enhance soil fertility and support various ecological processes. The accession number FSRA00000000.1 provides a reference for further genomic analysis, which could yield insights into the metabolic pathways utilized by this strain, particularly those involved in chitin degradation. Understanding these pathways may have implications for biotechnology and environmental management, especially in contexts where chitin waste needs to be processed efficiently.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga niabensis
Strainstrain DSM 24787

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga niabensis strain DSM 24787 genome assembly, contig:

Gene Summary

Adenine Count

1926341 bp

Thymine Count

1920849 bp

Guanine Count

1638811 bp

Cytosine Count

1640585 bp

Genome Length

7130081 bp

Protein-coding Genes

5774 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
iron-regulated abc transporter atpase subunit sufcSAMN04488055_0754Not AvailableNegative1013650 - 101441728383.3
iron-regulated abc transporter membrane component sufbSAMN04488055_0755Not AvailableNegative1014434 - 101587953576.7
predicted transcriptional regulator, arsr familySAMN04488055_0756Not AvailablePositive1016074 - 101671523972.6
Trna-lysNot AvailableNot AvailablePositive1016771 - 1016844Not Available
helix-turn-helix domain-containing proteinSAMN04488055_0758Not AvailableNegative1016963 - 10171998974.8
hypothetical proteinSAMN04488055_0759Not AvailablePositive1017471 - 101777011283.8
ribosome biogenesis gtpaseSAMN04488055_0760Not AvailablePositive1018170 - 101922239331.1
protein of unknown functionSAMN04488055_0761Not AvailableNegative1019287 - 102008729601.5
tonb-dependent receptor plug domainSAMN04488055_0762Not AvailableNegative1020120 - 102249289113.7
histidine kinaseSAMN04488055_0763Not AvailablePositive1022734 - 102374138617.3

Displaying genes 751 – 760 of 5830 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.