Chitinophaga niabensis strain DSM 24787

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga niabensis strain DSM 24787 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is non-motile and demonstrates optimal growth at 29 °C, classifying it as mesophilic. It possesses a single replicon, which is indicative of its genetic organization and cellular processes. The classification of Chitinophaga niabensis within the broader context of microbial ecology highlights its potential role in the decomposition of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. Given its aerobic nature, this bacterium likely contributes to nutrient cycling in its habitat by degrading chitin, which can enhance soil fertility and support various ecological processes. The accession number FSRA00000000.1 provides a reference for further genomic analysis, which could yield insights into the metabolic pathways utilized by this strain, particularly those involved in chitin degradation. Understanding these pathways may have implications for biotechnology and environmental management, especially in contexts where chitin waste needs to be processed efficiently.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga niabensis
Strainstrain DSM 24787

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga niabensis strain DSM 24787 genome assembly, contig:

Gene Summary

Adenine Count

1926341 bp

Thymine Count

1920849 bp

Guanine Count

1638811 bp

Cytosine Count

1640585 bp

Genome Length

7130081 bp

Protein-coding Genes

5774 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytochrome c oxidase cbb3-type subunit 3SAMN04488055_5608Not AvailableNegative6819188 - 682011734607.3
hypothetical proteinSAMN04488055_5609Not AvailableNegative6820119 - 68202986852.52
cytochrome c oxidase cbb3-type subunit i/iiSAMN04488055_5610Not AvailableNegative6820303 - 682241780523.8
cytochrome oxidase maturation protein, cbb3-typeSAMN04488055_5611Not AvailableNegative6822414 - 68225755988.3
cu+-exporting atpaseSAMN04488055_5612Not AvailableNegative6822638 - 682497486343.8
hypothetical proteinSAMN04488055_5613Not AvailablePositive6825124 - 682651851901.8
murein l,d-transpeptidase ycbb/ykudSAMN04488055_5614Not AvailablePositive6826582 - 682823463416.2
hypothetical proteinSAMN04488055_5615Not AvailableNegative6828427 - 682908022953.6
camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinasesSAMN04488055_5616Not AvailableNegative6829178 - 682979523843.9
methyltransferase domain-containing proteinSAMN04488055_5617Not AvailableNegative6829805 - 683040122738.3

Displaying genes 5571 – 5580 of 5830 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.