Chitinophaga niabensis strain DSM 24787

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga niabensis strain DSM 24787 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is non-motile and demonstrates optimal growth at 29 °C, classifying it as mesophilic. It possesses a single replicon, which is indicative of its genetic organization and cellular processes. The classification of Chitinophaga niabensis within the broader context of microbial ecology highlights its potential role in the decomposition of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. Given its aerobic nature, this bacterium likely contributes to nutrient cycling in its habitat by degrading chitin, which can enhance soil fertility and support various ecological processes. The accession number FSRA00000000.1 provides a reference for further genomic analysis, which could yield insights into the metabolic pathways utilized by this strain, particularly those involved in chitin degradation. Understanding these pathways may have implications for biotechnology and environmental management, especially in contexts where chitin waste needs to be processed efficiently.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga niabensis
Strainstrain DSM 24787

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga niabensis strain DSM 24787 genome assembly, contig:

Gene Summary

Adenine Count

1926341 bp

Thymine Count

1920849 bp

Guanine Count

1638811 bp

Cytosine Count

1640585 bp

Genome Length

7130081 bp

Protein-coding Genes

5774 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
non-processive endocellulaseSAMN04488055_0040Not AvailablePositive40963 - 4260660612.7
tobe domain-containing proteinSAMN04488055_0041Not AvailablePositive42623 - 4355834693.8
dna helicase/exodeoxyribonuclease v, alpha subunitSAMN04488055_0042Not AvailablePositive43578 - 4532665275.5
dna helicase/exodeoxyribonuclease v, gamma subunitSAMN04488055_0043Not AvailablePositive45326 - 48493121429.0
dna helicase/exodeoxyribonuclease v, beta subunitSAMN04488055_0044Not AvailablePositive48486 - 51851127759.0
swim zinc fingerSAMN04488055_0045Not AvailableNegative51828 - 5224115183.2
gluconolactonaseSAMN04488055_0046Not AvailableNegative52241 - 5312832990.4
arac-type dna-binding proteinSAMN04488055_0047Not AvailableNegative53179 - 5404833207.2
regulator of rnase e activity rraaSAMN04488055_0048Not AvailablePositive54191 - 5491326578.4
glycosyl hydrolases family 2SAMN04488055_0050Not AvailablePositive57708 - 60527105684.0

Displaying genes 41 – 50 of 5830 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.