Chitinophaga niabensis strain DSM 24787

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga niabensis strain DSM 24787 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is non-motile and demonstrates optimal growth at 29 °C, classifying it as mesophilic. It possesses a single replicon, which is indicative of its genetic organization and cellular processes. The classification of Chitinophaga niabensis within the broader context of microbial ecology highlights its potential role in the decomposition of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. Given its aerobic nature, this bacterium likely contributes to nutrient cycling in its habitat by degrading chitin, which can enhance soil fertility and support various ecological processes. The accession number FSRA00000000.1 provides a reference for further genomic analysis, which could yield insights into the metabolic pathways utilized by this strain, particularly those involved in chitin degradation. Understanding these pathways may have implications for biotechnology and environmental management, especially in contexts where chitin waste needs to be processed efficiently.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga niabensis
Strainstrain DSM 24787

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga niabensis strain DSM 24787 genome assembly, contig:

Gene Summary

Adenine Count

1926341 bp

Thymine Count

1920849 bp

Guanine Count

1638811 bp

Cytosine Count

1640585 bp

Genome Length

7130081 bp

Protein-coding Genes

5774 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane protein beta-barrel domain-containing proteinSAMN04488055_4109Not AvailableNegative5095523 - 509623024942.5
peroxiredoxinSAMN04488055_4110Not AvailableNegative5096323 - 509773253580.6
23s rrna (uracil1939-c5)-methyltransferaseSAMN04488055_4111Not AvailablePositive5097797 - 509920653183.8
rhomboid family proteinSAMN04488055_4112Not AvailablePositive5099235 - 510008932652.0
membrane associated serine protease, rhomboid familySAMN04488055_4113Not AvailablePositive5100127 - 510107134984.8
metal-dependent hydrolase, endonuclease/exonuclease/phosphatase familySAMN04488055_4114Not AvailablePositive5101486 - 510259242525.6
metal-dependent hydrolase, endonuclease/exonuclease/phosphatase familySAMN04488055_4115Not AvailablePositive5102643 - 510375542479.8
cysteinyl-trna synthetaseSAMN04488055_4116Not AvailablePositive5103792 - 510532758506.0
peptidase family m28SAMN04488055_4117Not AvailablePositive5105339 - 510630435558.2
dna-3-methyladenine glycosylase iiSAMN04488055_4118Not AvailablePositive5106308 - 510691923431.9

Displaying genes 4081 – 4090 of 5830 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.