Chitinophaga niabensis strain DSM 24787

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga niabensis strain DSM 24787 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is non-motile and demonstrates optimal growth at 29 °C, classifying it as mesophilic. It possesses a single replicon, which is indicative of its genetic organization and cellular processes. The classification of Chitinophaga niabensis within the broader context of microbial ecology highlights its potential role in the decomposition of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. Given its aerobic nature, this bacterium likely contributes to nutrient cycling in its habitat by degrading chitin, which can enhance soil fertility and support various ecological processes. The accession number FSRA00000000.1 provides a reference for further genomic analysis, which could yield insights into the metabolic pathways utilized by this strain, particularly those involved in chitin degradation. Understanding these pathways may have implications for biotechnology and environmental management, especially in contexts where chitin waste needs to be processed efficiently.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga niabensis
Strainstrain DSM 24787

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga niabensis strain DSM 24787 genome assembly, contig:

Gene Summary

Adenine Count

1926341 bp

Thymine Count

1920849 bp

Guanine Count

1638811 bp

Cytosine Count

1640585 bp

Genome Length

7130081 bp

Protein-coding Genes

5774 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
efflux transporter, outer membrane factor (omf) lipoprotein, nodt familySAMN04488055_1216Not AvailablePositive1628010 - 162944653191.9
ecsc protein family proteinSAMN04488055_1217Not AvailablePositive1629498 - 163020827290.4
helix-turn-helix domain-containing proteinSAMN04488055_1218Not AvailablePositive1630205 - 163105333155.6
predicted hydrolase of the alpha/beta superfamilySAMN04488055_1219Not AvailablePositive1631120 - 163225943452.6
glyoxalase-like domain-containing proteinSAMN04488055_1220Not AvailableNegative1632243 - 163263814886.6
rna polymerase sigma-70 factor, ecf subfamilySAMN04488055_1221Not AvailablePositive1632772 - 163335321924.7
protein of unknown functionSAMN04488055_1222Not AvailablePositive1633438 - 163463744244.6
tonb-linked outer membrane protein, susc/raga familySAMN04488055_1223Not AvailablePositive1634781 - 1638332131760.0
susd family proteinSAMN04488055_1224Not AvailablePositive1638344 - 163977754190.7
abc-2 type transport system atp-binding proteinSAMN04488055_1225Not AvailablePositive1639861 - 164080234983.5

Displaying genes 1211 – 1220 of 5830 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.