Sphingorhabdus marina DSM 22363

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Parasphingorhabdus

Description

Sphingorhabdus marina DSM 22363 is a Gram-negative, aerobic bacterium characterized by its rod shape. This species thrives optimally at a temperature of 29°C, indicating its mesophilic nature, as it prefers moderate temperature conditions for growth. Notably, Sphingorhabdus marina is non-spore-forming and possesses a single replicon, which may reflect its genomic stability and adaptability within its ecological niche. The aerobic requirement of Sphingorhabdus marina suggests that it plays a role in environments where oxygen is present, potentially participating in biogeochemical cycles. Its mesophilic growth range indicates that it may be well-suited to temperate marine environments, where temperatures can fluctuate around its optimal growth conditions. Understanding the characteristics of Sphingorhabdus marina, particularly its oxygen requirements and temperature preferences, can provide insights into its ecological role in marine ecosystems. As an aerobic organism, it may contribute to the degradation of organic matter and nutrient cycling, thus influencing the overall health and functioning of its habitat. The genomic accessions, such as FSQW00000000.1, can offer further opportunities for studying its genetic makeup and potential applications in biotechnology or environmental sciences.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusParasphingorhabdus
SpeciesParasphingorhabdus marina
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus marina DSM 22363 genome assembly, contig:

Gene Summary

Adenine Count

758321 bp

Thymine Count

754436 bp

Guanine Count

1018748 bp

Cytosine Count

1016423 bp

Genome Length

3547928 bp

Protein-coding Genes

3382 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxamine 5'-phosphate oxidaseSAMN02745824_0397Not AvailablePositive395033 - 39560822161.8
phenazine biosynthesis protein phzf familySAMN02745824_0398Not AvailablePositive395605 - 39640829388.5
cubico group peptidase, beta-lactamase class c familySAMN02745824_0399Not AvailableNegative396405 - 39754741779.9
hypothetical proteinSAMN02745824_0400Not AvailablePositive397577 - 39794513136.8
trna (5-methylaminomethyl-2-thiouridylate)-methyltransferaseSAMN02745824_0401Not AvailableNegative397951 - 39911442109.3
hypothetical proteinSAMN02745824_0402Not AvailablePositive399273 - 39958711348.2
protein of unknown functionSAMN02745824_0403Not AvailablePositive399700 - 40002612260.8
uncharacterized membrane protein yeaq/ymge, transglycosylase-associated protein familySAMN02745824_0404Not AvailablePositive400185 - 4004609534.21
rnd family efflux transporter, mfp subunitSAMN02745824_0405Not AvailablePositive400746 - 40193341019.5
acrb/acrd/acrf family proteinSAMN02745824_0406Not AvailablePositive401978 - 405412124382.0

Displaying genes 391 – 400 of 3446 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.