Sphingorhabdus marina DSM 22363

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Parasphingorhabdus

Description

Sphingorhabdus marina DSM 22363 is a Gram-negative, aerobic bacterium characterized by its rod shape. This species thrives optimally at a temperature of 29°C, indicating its mesophilic nature, as it prefers moderate temperature conditions for growth. Notably, Sphingorhabdus marina is non-spore-forming and possesses a single replicon, which may reflect its genomic stability and adaptability within its ecological niche. The aerobic requirement of Sphingorhabdus marina suggests that it plays a role in environments where oxygen is present, potentially participating in biogeochemical cycles. Its mesophilic growth range indicates that it may be well-suited to temperate marine environments, where temperatures can fluctuate around its optimal growth conditions. Understanding the characteristics of Sphingorhabdus marina, particularly its oxygen requirements and temperature preferences, can provide insights into its ecological role in marine ecosystems. As an aerobic organism, it may contribute to the degradation of organic matter and nutrient cycling, thus influencing the overall health and functioning of its habitat. The genomic accessions, such as FSQW00000000.1, can offer further opportunities for studying its genetic makeup and potential applications in biotechnology or environmental sciences.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusParasphingorhabdus
SpeciesParasphingorhabdus marina
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus marina DSM 22363 genome assembly, contig:

Gene Summary

Adenine Count

758321 bp

Thymine Count

754436 bp

Guanine Count

1018748 bp

Cytosine Count

1016423 bp

Genome Length

3547928 bp

Protein-coding Genes

3382 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-dehydroquinate synthaseSAMN02745824_2890Not AvailablePositive2950492 - 295159239108.9
kef-type potassium/proton antiporter, cpa2 family (tc 2.a.37.1)SAMN02745824_2891Not AvailableNegative2951602 - 295337463163.4
nifu homolog involved in fe-s cluster formationSAMN02745824_2892Not AvailableNegative2953378 - 295381815600.4
membrane protein required for colicin v productionSAMN02745824_2893Not AvailableNegative2953815 - 295432718368.7
dna repair protein rada/smsSAMN02745824_2894Not AvailableNegative2954337 - 295570148286.1
patatin-related proteinSAMN02745824_2895Not AvailablePositive2955793 - 295815088330.1
glyoxylase, beta-lactamase superfamily iiSAMN02745824_2896Not AvailableNegative2958174 - 295912133692.3
hypothetical proteinSAMN02745824_2897Not AvailableNegative2959162 - 295977022658.3
glutathione s-transferase, n-terminal domainSAMN02745824_2898Not AvailableNegative2959949 - 296058723745.5
1-acyl-sn-glycerol-3-phosphate acyltransferasesSAMN02745824_2899Not AvailablePositive2960849 - 296145122854.9

Displaying genes 2871 – 2880 of 3446 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.