Geodermatophilus obscurus strain DSM 43162

Gram-negativeCocciNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Geodermatophilales

Family

Geodermatophilaceae

Genus

Geodermatophilus

Description

Geodermatophilus obscurus strain DSM 43162 is a gram-negative, aerobic bacterium characterized by its filamentous cell arrangement and cocci shape. This strain is classified as a chemoorganotroph, indicating that it derives energy from organic compounds. It is found in the unique habitat of rock varnish in desert environments, which provides a specialized ecological niche. The bacterium's optimal growth temperature is 29°C, placing it within the mesophilic range. Notably, G. obscurus lacks mobility and does not possess flagella, which suggests that it relies on its environment for nutrient acquisition rather than active movement. The organism is free-living, indicating that it does not depend on a host for survival. With a single replicon, G. obscurus has a streamlined genomic structure that may contribute to its adaptability in the harsh conditions of its desert habitat. The presence of rock varnish, a coating found on rocks in arid regions, likely provides a microenvironment that supports the growth of this bacterium by offering moisture and nutrients. The specific adaptations of Geodermatophilus obscurus to its desert habitat highlight the ecological significance of microbial life in extreme environments. Understanding its metabolic capabilities and ecological relationships can provide insights into the resilience of life under harsh conditions and contribute to our knowledge of microbial diversity in desert ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderGeodermatophilales
FamilyGeodermatophilaceae
GenusGeodermatophilus
SpeciesGeodermatophilus obscurus
Strainstrain DSM 43162

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Geodermatophilus obscurus strain DSM 43162
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature29
Temperature rangeMesophilic
Habitatrock varnish in deserts
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Geodermatophilus obscurus strain DSM 43162 genome assembly,

Gene Summary

Adenine Count

672646 bp

Thymine Count

669679 bp

Guanine Count

1946950 bp

Cytosine Count

1943672 bp

Genome Length

5238583 bp

Protein-coding Genes

5003 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nucleotide-binding universal stress protein, uspa familySAMN05660350_00904Not AvailableNegative922019 - 92253117667.9
transcriptional regulator, marr familySAMN05660350_00905Not AvailablePositive922848 - 92336618411.6
hypothetical proteinSAMN05660350_00906Not AvailablePositive923487 - 92394216893.4
dehydrogenase (flavoprotein)SAMN05660350_00907Not AvailableNegative923980 - 92508938371.5
putative transcriptional regulatorSAMN05660350_00908Not AvailableNegative925086 - 9253318850.78
protein of unknown functionSAMN05660350_00909Not AvailableNegative925331 - 92578616130.7
aldehyde dehydrogenase (nad+)SAMN05660350_00910Not AvailableNegative925900 - 92742953735.8
sarcosine oxidase subunit betaSAMN05660350_00911Not AvailableNegative927522 - 92868840159.9
ornithine--oxo-acid transaminaseSAMN05660350_00912Not AvailableNegative928765 - 93000342704.0
dna-binding transcriptional regulator, lrp familySAMN05660350_00913Not AvailablePositive930161 - 93063117329.9

Displaying genes 911 – 920 of 5063 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.