Geodermatophilus obscurus strain DSM 43162

Gram-negativeCocciNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Geodermatophilales

Family

Geodermatophilaceae

Genus

Geodermatophilus

Description

Geodermatophilus obscurus strain DSM 43162 is a gram-negative, aerobic bacterium characterized by its filamentous cell arrangement and cocci shape. This strain is classified as a chemoorganotroph, indicating that it derives energy from organic compounds. It is found in the unique habitat of rock varnish in desert environments, which provides a specialized ecological niche. The bacterium's optimal growth temperature is 29°C, placing it within the mesophilic range. Notably, G. obscurus lacks mobility and does not possess flagella, which suggests that it relies on its environment for nutrient acquisition rather than active movement. The organism is free-living, indicating that it does not depend on a host for survival. With a single replicon, G. obscurus has a streamlined genomic structure that may contribute to its adaptability in the harsh conditions of its desert habitat. The presence of rock varnish, a coating found on rocks in arid regions, likely provides a microenvironment that supports the growth of this bacterium by offering moisture and nutrients. The specific adaptations of Geodermatophilus obscurus to its desert habitat highlight the ecological significance of microbial life in extreme environments. Understanding its metabolic capabilities and ecological relationships can provide insights into the resilience of life under harsh conditions and contribute to our knowledge of microbial diversity in desert ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderGeodermatophilales
FamilyGeodermatophilaceae
GenusGeodermatophilus
SpeciesGeodermatophilus obscurus
Strainstrain DSM 43162

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Geodermatophilus obscurus strain DSM 43162
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature29
Temperature rangeMesophilic
Habitatrock varnish in deserts
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Geodermatophilus obscurus strain DSM 43162 genome assembly,

Gene Summary

Adenine Count

672646 bp

Thymine Count

669679 bp

Guanine Count

1946950 bp

Cytosine Count

1943672 bp

Genome Length

5238583 bp

Protein-coding Genes

5003 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutamate dehydrogenase (nadp+)SAMN05660350_04608Not AvailablePositive4753041 - 475439048914.7
hypothetical proteinSAMN05660350_04609Not AvailableNegative4754448 - 475474710947.5
phage shock protein c (pspc) family proteinSAMN05660350_04610Not AvailableNegative4754740 - 475566030704.1
phage shock protein c (pspc) family proteinSAMN05660350_04611Not AvailablePositive4755755 - 475696641816.6
two component transcriptional regulator, luxr familySAMN05660350_04612Not AvailablePositive4756963 - 475761923164.7
n-acetylglucosaminyl deacetylase, lmbe familySAMN05660350_04613Not AvailableNegative4757810 - 475854426886.7
rna polymerase sigma-70 factor, ecf subfamilySAMN05660350_04614Not AvailableNegative4758541 - 475944332239.7
alkylhydroperoxidase ahpd family core domain-containing proteinSAMN05660350_04615Not AvailableNegative4759440 - 475999420516.6
chorismate mutaseSAMN05660350_04616Not AvailableNegative4760160 - 47604329643.74
sir2-like domain-containing proteinSAMN05660350_04617Not AvailablePositive4760925 - 476189936634.4

Displaying genes 4591 – 4600 of 5063 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.