Geodermatophilus obscurus strain DSM 43162

Gram-negativeCocciNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Geodermatophilales

Family

Geodermatophilaceae

Genus

Geodermatophilus

Description

Geodermatophilus obscurus strain DSM 43162 is a gram-negative, aerobic bacterium characterized by its filamentous cell arrangement and cocci shape. This strain is classified as a chemoorganotroph, indicating that it derives energy from organic compounds. It is found in the unique habitat of rock varnish in desert environments, which provides a specialized ecological niche. The bacterium's optimal growth temperature is 29°C, placing it within the mesophilic range. Notably, G. obscurus lacks mobility and does not possess flagella, which suggests that it relies on its environment for nutrient acquisition rather than active movement. The organism is free-living, indicating that it does not depend on a host for survival. With a single replicon, G. obscurus has a streamlined genomic structure that may contribute to its adaptability in the harsh conditions of its desert habitat. The presence of rock varnish, a coating found on rocks in arid regions, likely provides a microenvironment that supports the growth of this bacterium by offering moisture and nutrients. The specific adaptations of Geodermatophilus obscurus to its desert habitat highlight the ecological significance of microbial life in extreme environments. Understanding its metabolic capabilities and ecological relationships can provide insights into the resilience of life under harsh conditions and contribute to our knowledge of microbial diversity in desert ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderGeodermatophilales
FamilyGeodermatophilaceae
GenusGeodermatophilus
SpeciesGeodermatophilus obscurus
Strainstrain DSM 43162

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Geodermatophilus obscurus strain DSM 43162
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature29
Temperature rangeMesophilic
Habitatrock varnish in deserts
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Geodermatophilus obscurus strain DSM 43162 genome assembly,

Gene Summary

Adenine Count

672646 bp

Thymine Count

669679 bp

Guanine Count

1946950 bp

Cytosine Count

1943672 bp

Genome Length

5238583 bp

Protein-coding Genes

5003 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
adenine phosphoribosyltransferaseSAMN05660350_02070Not AvailableNegative2127343 - 212793620067.2
protein translocase subunit secfSAMN05660350_02071Not AvailableNegative2127933 - 212933348244.7
preprotein translocase subunit secdSAMN05660350_02072Not AvailableNegative2129330 - 213096456949.6
preprotein translocase subunit yajcSAMN05660350_02073Not AvailableNegative2130979 - 213131111564.3
holliday junction dna helicase subunit ruvbSAMN05660350_02074Not AvailableNegative2131469 - 213259339513.4
holliday junction dna helicase subunit ruvaSAMN05660350_02075Not AvailableNegative2132646 - 213328422043.7
holliday junction endonuclease ruvcSAMN05660350_02076Not AvailableNegative2133346 - 213391219515.7
dna-binding regulatory protein, yebc/pmpr familySAMN05660350_02077Not AvailableNegative2134113 - 213486226479.0
pyridoxal phosphate synthase yaae subunitSAMN05660350_02078Not AvailableNegative2134939 - 213559222770.3
uncharacterized membrane proteinSAMN05660350_02079Not AvailableNegative2135618 - 213672438013.4

Displaying genes 2071 – 2080 of 5063 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.