Rubritalea squalenifaciens DSM 18772

rodaerobic

Kingdom

Pseudomonadati

Phylum

Verrucomicrobiota

Class

Verrucomicrobiia

Order

Verrucomicrobiales

Family

Rubritaleaceae

Genus

Rubritalea

Description

Rubritalea squalenifaciens DSM 18772 is a Gram-negative, aerobic, non-motile bacterium characterized by its rod shape. This species thrives optimally at a temperature of 25°C, placing it within the mesophilic range, which is typically between 20°C and 45°C for microbial growth. With a single replicon, Rubritalea squalenifaciens has a streamlined genomic organization that may contribute to its adaptability in various environments. The accession number for this strain is FQYR00000000.1, which can be used for further genomic studies and comparisons with related microorganisms. The ecological implications of Rubritalea squalenifaciens may be significant, as its aerobic nature suggests a role in environments where oxygen is readily available. This could include soil and aquatic ecosystems, where it may participate in biogeochemical cycles or contribute to the breakdown of organic matter. Understanding its specific ecological niche and interactions with other microorganisms could provide insights into its function and importance in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumVerrucomicrobiota
ClassVerrucomicrobiia
OrderVerrucomicrobiales
FamilyRubritaleaceae
GenusRubritalea
SpeciesRubritalea squalenifaciens
StrainDSM 18772

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rubritalea squalenifaciens DSM 18772 genome assembly, contig:

Gene Summary

Adenine Count

1004704 bp

Thymine Count

1070559 bp

Guanine Count

1217459 bp

Cytosine Count

1028416 bp

Genome Length

4322488 bp

Protein-coding Genes

3805 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aspartate aminotransferaseSAMN02745181_1004Not AvailablePositive1000428 - 100150739369.1
protein of unknown functionSAMN02745181_1005Not AvailablePositive1001644 - 100311655268.1
caspase domain-containing proteinSAMN02745181_1006Not AvailablePositive1003156 - 1008219189368.0
uncharacterized conserved protein yafd, endonuclease/exonuclease/phosphatase (eep) superfamilySAMN02745181_1007Not AvailableNegative1008285 - 101032475037.0
uncharacterized conserved protein ybap, trab familySAMN02745181_1008Not AvailableNegative1010454 - 101140736670.2
hypothetical proteinSAMN02745181_1009Not AvailableNegative1011413 - 101221028660.4
n-acetylmuramoyl-l-alanine amidaseSAMN02745181_1010Not AvailablePositive1012334 - 101373453439.3
nucleoside-diphosphate-sugar epimeraseSAMN02745181_1011Not AvailablePositive1013736 - 101457230460.2
hypothetical proteinSAMN02745181_1012Not AvailablePositive1014573 - 101494413746.9
septum formation proteinSAMN02745181_1013Not AvailablePositive1014972 - 101554421321.0

Displaying genes 971 – 980 of 3849 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.