Rubritalea squalenifaciens DSM 18772

rodaerobic

Kingdom

Pseudomonadati

Phylum

Verrucomicrobiota

Class

Verrucomicrobiia

Order

Verrucomicrobiales

Family

Rubritaleaceae

Genus

Rubritalea

Description

Rubritalea squalenifaciens DSM 18772 is a Gram-negative, aerobic, non-motile bacterium characterized by its rod shape. This species thrives optimally at a temperature of 25°C, placing it within the mesophilic range, which is typically between 20°C and 45°C for microbial growth. With a single replicon, Rubritalea squalenifaciens has a streamlined genomic organization that may contribute to its adaptability in various environments. The accession number for this strain is FQYR00000000.1, which can be used for further genomic studies and comparisons with related microorganisms. The ecological implications of Rubritalea squalenifaciens may be significant, as its aerobic nature suggests a role in environments where oxygen is readily available. This could include soil and aquatic ecosystems, where it may participate in biogeochemical cycles or contribute to the breakdown of organic matter. Understanding its specific ecological niche and interactions with other microorganisms could provide insights into its function and importance in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumVerrucomicrobiota
ClassVerrucomicrobiia
OrderVerrucomicrobiales
FamilyRubritaleaceae
GenusRubritalea
SpeciesRubritalea squalenifaciens
StrainDSM 18772

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rubritalea squalenifaciens DSM 18772 genome assembly, contig:

Gene Summary

Adenine Count

1004704 bp

Thymine Count

1070559 bp

Guanine Count

1217459 bp

Cytosine Count

1028416 bp

Genome Length

4322488 bp

Protein-coding Genes

3805 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphoglycerate kinaseSAMN02745181_3711Not AvailablePositive4102972 - 410416842714.9
triosephosphate isomeraseSAMN02745181_3712Not AvailablePositive4104242 - 410501227052.0
regulatory p domain of the subtilisin-like proprotein convertaseSAMN02745181_3713Not AvailablePositive4105430 - 410818397429.6
hypothetical proteinSAMN02745181_3714Not AvailablePositive4108383 - 41086289051.84
phosphoribosyl 1,2-cyclic phosphodiesteraseSAMN02745181_3715Not AvailableNegative4108633 - 410948430676.7
hypothetical proteinSAMN02745181_3716Not AvailablePositive4109595 - 411028425308.3
hypothetical proteinSAMN02745181_3717Not AvailablePositive4110292 - 411091222788.3
3'-5' exoribonucleaseSAMN02745181_3718Not AvailablePositive4110885 - 411213247115.5
chondroitin-sulfate-abc endolyase/exolyaseSAMN02745181_3719Not AvailableNegative4112124 - 4115120112170.0
ribosome-associated proteinSAMN02745181_3720Not AvailableNegative4115194 - 411556813975.7

Displaying genes 3651 – 3660 of 3849 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.