Kingdom
Pseudomonadati
Phylum
Verrucomicrobiota
Class
Verrucomicrobiia
Order
Verrucomicrobiales
Family
Rubritaleaceae
Genus
Rubritalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Verrucomicrobiota |
| Class | Verrucomicrobiia |
| Order | Verrucomicrobiales |
| Family | Rubritaleaceae |
| Genus | Rubritalea |
| Species | Rubritalea squalenifaciens |
| Strain | DSM 18772 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1004704 bp
Thymine Count
1070559 bp
Guanine Count
1217459 bp
Cytosine Count
1028416 bp
Genome Length
4322488 bp
Protein-coding Genes
3805 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or ed/haloacid dehalogenase superfamily, subfamily ia, variant 1 with third motif having dx(3-4)d or dx(3-4)e | SAMN02745181_3256 | Not Available | Negative | 3568014 - 3568694 | 24746.7 |
| 3-dehydroquinate dehydratase | SAMN02745181_3257 | Not Available | Negative | 3568787 - 3569494 | 25486.7 |
| pep-cterm protein-sorting domain-containing protein/myxo-cterm domain-containing protein | SAMN02745181_3258 | Not Available | Negative | 3569642 - 3570322 | 23443.1 |
| hypothetical protein | SAMN02745181_3259 | Not Available | Positive | 3570356 - 3570508 | 5861.79 |
| pep-cterm protein-sorting domain-containing protein | SAMN02745181_3260 | Not Available | Negative | 3570528 - 3571277 | 26026.0 |
| fecr family protein | SAMN02745181_3261 | Not Available | Negative | 3571358 - 3572845 | 54076.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN02745181_3262 | Not Available | Negative | 3572892 - 3573431 | 20918.1 |
| protein of unknown function | SAMN02745181_3263 | Not Available | Negative | 3573507 - 3574994 | 54972.3 |
| planctomycete cytochrome c | SAMN02745181_3264 | Not Available | Negative | 3574991 - 3578191 | 119221.0 |
| porin | SAMN02745181_3265 | Not Available | Negative | 3578382 - 3579674 | 46003.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
