Rubritalea squalenifaciens DSM 18772

rodaerobic

Kingdom

Pseudomonadati

Phylum

Verrucomicrobiota

Class

Verrucomicrobiia

Order

Verrucomicrobiales

Family

Rubritaleaceae

Genus

Rubritalea

Description

Rubritalea squalenifaciens DSM 18772 is a Gram-negative, aerobic, non-motile bacterium characterized by its rod shape. This species thrives optimally at a temperature of 25°C, placing it within the mesophilic range, which is typically between 20°C and 45°C for microbial growth. With a single replicon, Rubritalea squalenifaciens has a streamlined genomic organization that may contribute to its adaptability in various environments. The accession number for this strain is FQYR00000000.1, which can be used for further genomic studies and comparisons with related microorganisms. The ecological implications of Rubritalea squalenifaciens may be significant, as its aerobic nature suggests a role in environments where oxygen is readily available. This could include soil and aquatic ecosystems, where it may participate in biogeochemical cycles or contribute to the breakdown of organic matter. Understanding its specific ecological niche and interactions with other microorganisms could provide insights into its function and importance in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumVerrucomicrobiota
ClassVerrucomicrobiia
OrderVerrucomicrobiales
FamilyRubritaleaceae
GenusRubritalea
SpeciesRubritalea squalenifaciens
StrainDSM 18772

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rubritalea squalenifaciens DSM 18772 genome assembly, contig:

Gene Summary

Adenine Count

1004704 bp

Thymine Count

1070559 bp

Guanine Count

1217459 bp

Cytosine Count

1028416 bp

Genome Length

4322488 bp

Protein-coding Genes

3805 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or ed/haloacid dehalogenase superfamily, subfamily ia, variant 1 with third motif having dx(3-4)d or dx(3-4)eSAMN02745181_3256Not AvailableNegative3568014 - 356869424746.7
3-dehydroquinate dehydrataseSAMN02745181_3257Not AvailableNegative3568787 - 356949425486.7
pep-cterm protein-sorting domain-containing protein/myxo-cterm domain-containing proteinSAMN02745181_3258Not AvailableNegative3569642 - 357032223443.1
hypothetical proteinSAMN02745181_3259Not AvailablePositive3570356 - 35705085861.79
pep-cterm protein-sorting domain-containing proteinSAMN02745181_3260Not AvailableNegative3570528 - 357127726026.0
fecr family proteinSAMN02745181_3261Not AvailableNegative3571358 - 357284554076.9
rna polymerase sigma-70 factor, ecf subfamilySAMN02745181_3262Not AvailableNegative3572892 - 357343120918.1
protein of unknown functionSAMN02745181_3263Not AvailableNegative3573507 - 357499454972.3
planctomycete cytochrome cSAMN02745181_3264Not AvailableNegative3574991 - 3578191119221.0
porinSAMN02745181_3265Not AvailableNegative3578382 - 357967446003.7

Displaying genes 3201 – 3210 of 3849 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.